# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.05150	a.248.1.1	133507
1w9iA	770	3.898		
1y6uA	70	4.477		
2v26A	784	9.362		
1xb4A	202	10.21	a.4.5.54,a.4.5.54	121832,121833
1u3eM	174	14.41	d.4.1.3,d.285.1.1	107640,107641
1qw1A	121	16.61		
1w7jA	795	16.89	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	18.95		
1ae7A	119	19.41	a.133.1.2	19553
2gwfB	134	20.04		
1ik9A	213	22.98	b.59.1.1,h.1.11.1	66176,66177
1m85A	484	26.67	e.5.1.1	74578
2feaA	236	28.11	c.108.1.20	133327
1gbs	185	28.30		
2oy9A	98	33.67		
2oa4A	101	33.70		
2j01U	118	34.48		
2v9cA	215	41.17		
1m1qA	91	41.78	a.138.1.3	74419
1jpyA	137	43.42	g.17.1.6	67065
1ubkS	267	43.95	e.19.1.1	88423
2al3A	90	44.18	d.15.1.2	126957
1aorA	605	46.70	a.110.1.1,d.152.1.1	19042,41794
2f6mA	65	46.79	a.2.17.1	133051
1hh2P	344	49.03	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
1dgfA	497	51.50	e.5.1.1	42782
2fzpA	144	51.63		
3c8yA	574	52.36		
1zupA	315	55.07	c.55.3.11	125681
2nsvA	52	57.10		
1k6kA	143	63.15	a.174.1.1	77274
2pgfA	371	63.49		
1m7sA	484	68.77	e.5.1.1	74574
1fe0A	68	69.25	d.58.17.1	39345
1g4iA	123	69.28	a.133.1.2	60241
2zmfA	189	73.87		
1x9fA	151	74.99	a.1.1.2	114983
2zfoC	147	75.18		
2ogbA	126	75.18		
2d5rB	116	75.34		
1vs3A	249	75.95		
1vflA	356	76.31	c.1.9.1	120041
1ul7A	102	76.59	d.129.6.1	99540
1n28A	124	76.85	a.133.1.2	91550
2cvhA	220	77.79		
1cg5A	141	80.25	a.1.1.2	15406
1h21A	247	80.34	a.138.1.3	76510
1rp3A	239	80.83	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2z99A	219	81.17		
1vhmA	195	81.29	d.110.2.1	100691
1fehA	574	81.93	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
2ghjA	118	84.75		
2zfoB	142	85.30		
1qwlA	505	85.46	e.5.1.1	96483
2qnuA	226	87.79		
1gbsA	185	88.43	d.2.1.5	36986
1yhuB	144	89.05