# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.01071	a.248.1.1	133507
1w9iA	770	2.627		
1u3eM	174	4.792	d.4.1.3,d.285.1.1	107640,107641
1qw1A	121	5.465		
2v26A	784	6.919		
1y6uA	70	7.277		
2cobA	70	8.046	a.4.1.15	130673
1xb4A	202	8.821	a.4.5.54,a.4.5.54	121832,121833
1w7jA	795	11.57	b.34.3.1,c.37.1.9	120688,120689
2oy9A	98	12.53		
2bkhA	814	17.43		
2j01U	118	17.99		
2d5rB	116	18.22		
1gbs	185	19.04		
2z99A	219	20.78		
1ubkS	267	21.10	e.19.1.1	88423
2al3A	90	22.59	d.15.1.2	126957
2pgfA	371	22.92		
1wi9A	72	24.25	a.4.5.47	114663
1k6kA	143	26.14	a.174.1.1	77274
1rp3A	239	27.51	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
5eau	548	28.09		
1s6lA	212	28.65		
2ghjA	118	29.38		
1tw3A	360	33.96	a.4.5.29,c.66.1.12	107373,107374
1wdvA	152	35.36	d.116.1.1	114539
1aorA	605	35.74	a.110.1.1,d.152.1.1	19042,41794
2ouwA	138	37.41		
2i9uA	439	37.78		
1tz9A	367	39.14	c.1.15.6	107466
2cx5A	158	39.15		
1m85A	484	39.21	e.5.1.1	74578
1vflA	356	39.48	c.1.9.1	120041
3cjsB	72	39.92		
1gbsA	185	40.33	d.2.1.5	36986
2r3sA	335	41.43		
2gokA	429	42.33		
2hp0A	466	42.93		
2amdA	311	47.68		
2nsaA	170	47.72		
3c6fA	153	49.84		
2v9vA	135	51.63		
3bnyA	320	53.38		
1di1A	300	53.94	a.128.1.4	19446
2cwcA	303	54.25		
1e3dA	266	55.02	e.19.1.1	59188
2amxA	376	55.41	c.1.9.1	127024
2rn7A	108	56.77		
2b5aA	77	57.74	a.35.1.3	127882
3cnhA	200	57.93		
2h2zA	306	58.35		
1ps1A	337	59.84	a.128.1.4	19450
1yz7A	188	60.45		
2imrA	420	60.64		
2z0xA	158	61.35		
1vs3A	249	61.37		
1mp9A	198	63.00	d.129.1.1,d.129.1.1	91385,91386
2feaA	236	63.03	c.108.1.20	133327
1jpyA	137	63.44	g.17.1.6	67065
2gwfB	134	64.18		
2z15A	130	64.46		
1khyA	148	64.96	a.174.1.1	77410
1cyo	93	65.45		
2q0tA	263	67.15		
1fipA	98	69.34	a.4.1.12	18980
2oa6A	320	72.76		
2oap1	511	74.41		
1yhuB	144	75.59		
2oa4A	101	76.06		
1x9fB	145	76.77	a.1.1.2	114984
2vl6A	268	77.57		
2o8xA	70	78.03		
2jn6A	97	78.63		
2hinA	71	79.13		
1hh2P	344	79.89	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
1zq7A	207	80.70	d.309.1.1	125501
2zfoB	142	81.12		
2qebA	145	81.17		
1jkoC	52	83.44	a.4.1.2	66809
1gzsB	165	87.14	a.168.1.1	76425
2zfoC	147	87.68		
1wuiS	267	88.30	e.19.1.1	121290
1szqA	483	88.39	e.44.1.1	99045
1vfsA	386	89.02	b.49.2.2,c.1.6.1	108584,108585