# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.4251	a.248.1.1	133507
1y6uA	70	18.92		
1m85A	484	20.33	e.5.1.1	74578
1w9iA	770	23.92		
1gbs	185	23.97		
1u3eM	174	26.27	d.4.1.3,d.285.1.1	107640,107641
2v26A	784	26.88		
1gbsA	185	29.22	d.2.1.5	36986
1dgfA	497	35.71	e.5.1.1	42782
1jpyA	137	37.62	g.17.1.6	67065
1m7sA	484	37.83	e.5.1.1	74574
2oap1	511	40.36		
2feaA	236	43.19	c.108.1.20	133327
2oy9A	98	45.32		
1qw1A	121	45.87		
1xb4A	202	49.30	a.4.5.54,a.4.5.54	121832,121833
2uwxA	494	49.84	e.3.1.1	140002
1w7jA	795	51.24	b.34.3.1,c.37.1.9	120688,120689
1aorA	605	56.05	a.110.1.1,d.152.1.1	19042,41794
2d2mC	147	58.89		
1fe0A	68	59.48	d.58.17.1	39345
3c8yA	574	61.04		
1qwlA	505	63.93	e.5.1.1	96483
2zfoB	142	64.72		
2bkhA	814	65.93		
1x9fA	151	66.72	a.1.1.2	114983
1gweA	503	70.01	e.5.1.1	70667
2ieaA	886	71.46	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
2pdrA	149	71.92		
1ubkS	267	72.53	e.19.1.1	88423
2v9cA	215	72.70		
1pq7A	224	74.18	b.47.1.2	95002
1ik9A	213	74.50	b.59.1.1,h.1.11.1	66176,66177
1jf4A	147	75.43	a.1.1.2	71643
1u5uA	374	77.17	e.5.1.2	113052
1sur	215	78.00		
1ae7A	119	79.54	a.133.1.2	19553
1bywA	110	80.43	d.110.3.6	40912
2z99A	219	80.56		
2ouwA	138	81.52		
1ecaA	136	82.82	a.1.1.2	15209
2pgfA	371	83.13		
1vehA	92	88.15	d.52.8.1	113635
2zmfA	189	89.05		
1rp3A	239	89.43	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680