# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3612	a.248.1.1	133507
1w9iA	770	16.37		
1y6uA	70	16.45		
1m85A	484	21.39	e.5.1.1	74578
1gbs	185	22.17		
1u3eM	174	24.13	d.4.1.3,d.285.1.1	107640,107641
1gbsA	185	24.34	d.2.1.5	36986
2oap1	511	29.47		
2v26A	784	32.25		
1dgfA	497	36.49	e.5.1.1	42782
1qw1A	121	40.31		
1m7sA	484	40.44	e.5.1.1	74574
2oy9A	98	41.67		
1jpyA	137	42.61	g.17.1.6	67065
1w7jA	795	45.50	b.34.3.1,c.37.1.9	120688,120689
2feaA	236	47.15	c.108.1.20	133327
1aorA	605	56.02	a.110.1.1,d.152.1.1	19042,41794
1ae7A	119	57.14	a.133.1.2	19553
2z99A	219	57.82		
3c8yA	574	61.07		
2uwxA	494	61.70	e.3.1.1	140002
1pq7A	224	64.67	b.47.1.2	95002
1qwlA	505	67.18	e.5.1.1	96483
2bkhA	814	68.23		
1xb4A	202	70.11	a.4.5.54,a.4.5.54	121832,121833
2v9cA	215	72.65		
2gwfB	134	77.08		
2pdrA	149	77.21		
1rp3A	239	77.86	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2zmfA	189	78.02		
1bywA	110	78.12	d.110.3.6	40912
1ubkS	267	78.82	e.19.1.1	88423
1ik9A	213	79.90	b.59.1.1,h.1.11.1	66176,66177
2f6mA	65	81.27	a.2.17.1	133051
2ieaA	886	81.42	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
1sur	215	81.55		
1gweA	503	82.49	e.5.1.1	70667
2cobA	70	83.74	a.4.1.15	130673
1u5uA	374	86.09	e.5.1.2	113052
2d2mC	147	87.23