# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.03258	a.248.1.1	133507
1w9iA	770	2.734		
1w7jA	795	7.200	b.34.3.1,c.37.1.9	120688,120689
2v26A	784	7.206		
1y6uA	70	10.36		
2j01U	118	10.80		
2bkhA	814	11.35		
1u3eM	174	17.88	d.4.1.3,d.285.1.1	107640,107641
2oap1	511	22.32		
2qwvA	208	24.67		
1ogiA	303	27.29	b.43.4.2,c.25.1.1	92914,92915
1k6kA	143	27.36	a.174.1.1	77274
2d2mC	147	27.40		
1khyA	148	29.31	a.174.1.1	77410
1qw1A	121	31.68		
1fe0A	68	31.75	d.58.17.1	39345
2i1qA	322	33.43	a.60.4.1,c.37.1.11	136984,136985
1gweA	503	46.30	e.5.1.1	70667
1ypyA	184	53.22		
1jpyA	137	54.26	g.17.1.6	67065
1fipA	98	56.18	a.4.1.12	18980
2i9uA	439	59.45		
1wmhA	89	61.27	d.15.2.2	114744
1jf4A	147	61.59	a.1.1.2	71643
2gokA	429	61.67		
2imrA	420	64.44		
2b5aA	77	64.78	a.35.1.3	127882
2al3A	90	64.85	d.15.1.2	126957
2qnuA	226	69.61		
2zfoC	147	69.67		
2gwfB	134	71.87		
1wi9A	72	72.18	a.4.5.47	114663
1zupA	315	73.11	c.55.3.11	125681
1t5jA	313	73.89	a.209.1.1	99125
1m85A	484	74.93	e.5.1.1	74578
1x9fA	151	77.27	a.1.1.2	114983
1fehA	574	77.56	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
2cobA	70	78.83	a.4.1.15	130673
3c8yA	574	79.96		
1jf3A	147	81.46	a.1.1.2	71642
2scpA	174	81.60	a.39.1.5	17256
3b7hA	78	82.12		
2db0A	253	83.54		
2qipA	165	85.88		
2pgfA	371	86.94		
2culA	232	86.99	c.3.1.7	130813
3daaA	277	89.14	e.17.1.1	43272
2dklA	85	89.27	a.5.2.1	131555