# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.4856	a.248.1.1	133507
1w9iA	770	6.953		
2v26A	784	11.56		
2bkhA	814	21.73		
1y6uA	70	21.86		
1u3eM	174	22.18	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	24.27	b.34.3.1,c.37.1.9	120688,120689
2d5rB	116	37.48		
2feaA	236	39.92	c.108.1.20	133327
1jpyA	137	39.96	g.17.1.6	67065
1ae7A	119	42.84	a.133.1.2	19553
1k6kA	143	43.54	a.174.1.1	77274
2oap1	511	45.76		
2al3A	90	47.88	d.15.1.2	126957
1m85A	484	48.62	e.5.1.1	74578
3c8yA	574	52.17		
1gbs	185	52.35		
1gbsA	185	55.49	d.2.1.5	36986
1dgfA	497	57.88	e.5.1.1	42782
1aorA	605	62.64	a.110.1.1,d.152.1.1	19042,41794
1qw1A	121	66.68		
2cobA	70	72.47	a.4.1.15	130673
5eau	548	76.02		
2f6mA	65	78.10	a.2.17.1	133051
2cp9A	64	84.82	a.5.2.2	130696
1ubkS	267	85.35	e.19.1.1	88423
1ik9A	213	89.36	b.59.1.1,h.1.11.1	66176,66177
1rp3A	239	89.89	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680