# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.008826 a.248.1.1 133507 2pgfA 371 0.3743 1ae7A 119 1.642 a.133.1.2 19553 1tcaA 317 2.954 c.69.1.17 34726 1dgfA 497 3.391 e.5.1.1 42782 1mb3A 124 3.972 c.23.1.1 78907 2zfoB 142 4.266 1m7sA 484 4.749 e.5.1.1 74574 2feaA 236 5.360 c.108.1.20 133327 1xrsA 516 5.682 c.1.19.4 115883 2qezA 455 6.042 1zxmA 400 6.527 2obwA 258 6.695 1m1nA 491 7.772 c.92.2.3 78417 1xngA 268 10.31 c.26.2.1 122186 2vhfA 374 10.78 1di1A 300 13.28 a.128.1.4 19446 2zfoA 140 13.65 1nrfA 262 13.87 e.3.1.1 92086 1bif 469 13.90 1z9pA 155 14.68 1a2aA 122 15.11 a.133.1.2 19540 1z9nA 177 15.56 1mc2A 122 15.93 a.133.1.2 74622 2d5rB 116 15.97 1y6uA 70 16.37 1bifA 469 16.80 c.37.1.7,c.60.1.4 31961,34003 1u3eM 174 18.12 d.4.1.3,d.285.1.1 107640,107641 2d2mC 147 18.88 1jltB 122 19.56 a.133.1.2 66868 2rfmA 192 19.71 2jhnA 295 19.79 1s8iA 121 19.80 a.133.1.2 98735 2al3A 90 19.86 d.15.1.2 126957 7aatA 401 19.93 c.67.1.1 34250 1yxlA 119 21.39 a.133.1.2 124191 1s6bB 119 21.59 a.133.1.2 98593 1s6bA 119 23.84 a.133.1.2 98592 2dgkA 452 25.23 1cl8A 276 25.29 c.52.1.1 33230 1qwlA 505 25.40 e.5.1.1 96483 1bio 228 26.59 2fb2A 340 28.04 1g4iA 123 28.55 a.133.1.2 60241 1iow 306 29.88 2asuB 234 30.17 1p1xA 260 30.43 c.1.10.1 104060 1wmhA 89 31.53 d.15.2.2 114744 1wxxA 382 32.14 b.122.1.9,c.66.1.51 121418,121419 2yrrA 353 32.36 1gweA 503 33.63 e.5.1.1 70667 1w9iA 770 35.22 2amdA 311 36.14 1jpyA 137 36.70 g.17.1.6 67065 1qhoA 686 39.88 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2g5gX 268 41.05 2zfoC 147 41.12 2v7fA 150 41.62 1kblA 873 42.47 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1khyA 148 43.72 a.174.1.1 77410 2iufA 688 44.87 1ars 396 46.16 1vflA 356 46.31 c.1.9.1 120041 2d80A 318 47.01 1oqsB 122 49.05 a.133.1.2 93428 1xsfA 108 50.02 1thgA 544 52.89 c.69.1.17 34763 2yx0A 342 53.82 2p10A 286 54.61 1l5aA 436 55.91 c.43.1.2,c.43.1.2 75923,75924 1u6tA 121 57.14 2d74B 148 57.65 2vl7A 540 58.14 2scpA 174 59.34 a.39.1.5 17256 2jabA 136 59.71 2pgd 482 59.74 1eg5A 384 60.14 c.67.1.3 34429 2qedA 258 61.99 1fe0A 68 62.77 d.58.17.1 39345 2h2zA 306 66.01 2v9lA 274 66.16 1vkhA 273 68.40 c.69.1.32 108662 2a1iA 146 69.18 c.52.1.20 125999 2ihtA 573 69.25 1xd7A 145 70.07 a.4.5.55 109566 1eexB 224 70.61 c.51.3.1 33213 1qw1A 121 70.70 2je6A 277 71.01 2f6mA 65 71.80 a.2.17.1 133051 1rp3A 239 72.54 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1abbA 828 73.81 c.87.1.4 35536 2zcoA 293 74.23 2prrA 197 74.93 1m1qA 91 77.84 a.138.1.3 74419 1y4lA 121 77.90 a.133.1.2 122624 2i9uA 439 79.52 2chuA 296 80.06 c.92.2.4 130485 1vehA 92 80.54 d.52.8.1 113635 1hrnA 337 81.82 b.50.1.2 26869 2z15A 130 82.31 2vlqA 86 84.30 2z0xA 158 84.91 2qm8A 337 85.53 1peqA 714 87.35 a.98.1.1,c.7.1.2 104131,104132