# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2715	a.248.1.1	133507
1w9iA	770	7.713		
2v26A	784	13.94		
1y6uA	70	14.90		
1ae7A	119	19.87	a.133.1.2	19553
1u3eM	174	25.44	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	26.69		
1w7jA	795	30.39	b.34.3.1,c.37.1.9	120688,120689
1m85A	484	32.06	e.5.1.1	74578
3c8yA	574	34.14		
2feaA	236	36.66	c.108.1.20	133327
1dgfA	497	44.40	e.5.1.1	42782
1ik9A	213	55.47	b.59.1.1,h.1.11.1	66176,66177
1k6kA	143	56.58	a.174.1.1	77274
1aorA	605	59.04	a.110.1.1,d.152.1.1	19042,41794
2al3A	90	61.39	d.15.1.2	126957
1pq7A	224	63.88	b.47.1.2	95002
1qw1A	121	64.48		
2oap1	511	67.38		
1m7sA	484	69.08	e.5.1.1	74574
1jpyA	137	69.86	g.17.1.6	67065
1gbs	185	75.39		
1gbsA	185	76.07	d.2.1.5	36986
1m1qA	91	76.88	a.138.1.3	74419
1fehA	574	77.01	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
1gweA	503	81.07	e.5.1.1	70667
1g38A	393	86.62	c.66.1.27,d.287.1.1	111567,111568
2oy9A	98	87.89		
1hh2P	344	89.42	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838