# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3154	a.248.1.1	133507
1w9iA	770	8.088		
1y6uA	70	10.45		
1xb4A	202	18.04	a.4.5.54,a.4.5.54	121832,121833
2gwfB	134	18.82		
1ae7A	119	21.38	a.133.1.2	19553
1qw1A	121	22.46		
1ik9A	213	23.24	b.59.1.1,h.1.11.1	66176,66177
1u3eM	174	25.83	d.4.1.3,d.285.1.1	107640,107641
1pq7A	224	31.44	b.47.1.2	95002
2v26A	784	34.64		
1m85A	484	35.01	e.5.1.1	74578
1w7jA	795	36.92	b.34.3.1,c.37.1.9	120688,120689
3c8yA	574	39.70		
1jpyA	137	40.14	g.17.1.6	67065
2fzpA	144	49.03		
2feaA	236	50.72	c.108.1.20	133327
1gyoA	109	52.45	a.138.1.1	70763
2oy9A	98	53.20		
2ogbA	126	54.62		
1gbs	185	54.98		
2nsvA	52	57.65		
2oa4A	101	59.09		
2bkhA	814	59.26		
1hh2P	344	59.92	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	65835,65836,65837,65838
2v9cA	215	60.30		
2al3A	90	61.20	d.15.1.2	126957
1ubkS	267	63.03	e.19.1.1	88423
1dgfA	497	63.63	e.5.1.1	42782
1fe0A	68	69.29	d.58.17.1	39345
1m7sA	484	72.13	e.5.1.1	74574
2zfoC	147	75.60		
2f6mA	65	78.56	a.2.17.1	133051
2nxoA	291	80.76		
1yhuB	144	81.15		
1g38A	393	81.66	c.66.1.27,d.287.1.1	111567,111568
1aorA	605	82.42	a.110.1.1,d.152.1.1	19042,41794
1bio	228	84.59		
1fndA	314	84.62	b.43.4.2,c.25.1.1	25626,31516
2j01U	118	85.75		
1m1qA	91	87.08	a.138.1.3	74419
1qwlA	505	87.38	e.5.1.1	96483
1vk3A	615	87.78	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
2zfoB	142	88.77