# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1168	a.248.1.1	133507
1w9iA	770	7.025		
1y6uA	70	12.29		
1u3eM	174	15.30	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	16.41	b.34.3.1,c.37.1.9	120688,120689
2v26A	784	16.97		
1xb4A	202	17.33	a.4.5.54,a.4.5.54	121832,121833
1qw1A	121	21.29		
1ik9A	213	22.93	b.59.1.1,h.1.11.1	66176,66177
2gwfB	134	24.56		
1ae7A	119	24.70	a.133.1.2	19553
2bkhA	814	33.00		
1gbs	185	33.89		
2feaA	236	37.11	c.108.1.20	133327
2oy9A	98	38.11		
1ubkS	267	38.59	e.19.1.1	88423
3c8yA	574	39.30		
1aorA	605	40.74	a.110.1.1,d.152.1.1	19042,41794
2zfoC	147	45.83		
1pq7A	224	46.35	b.47.1.2	95002
1dgfA	497	48.55	e.5.1.1	42782
1m85A	484	52.81	e.5.1.1	74578
2nsvA	52	53.50		
2zfoB	142	54.62		
1chuA	540	54.80	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
2fzpA	144	54.87		
1jpyA	137	55.08	g.17.1.6	67065
2al3A	90	56.26	d.15.1.2	126957
2ogbA	126	57.25		
1gyoA	109	59.40	a.138.1.1	70763
2j01U	118	60.79		
1x9fB	145	61.07	a.1.1.2	114984
1k6kA	143	63.17	a.174.1.1	77274
1ecaA	136	64.02	a.1.1.2	15209
1yhuB	144	64.09		
2oa4A	101	64.36		
2z99A	219	64.76		
1m7sA	484	65.26	e.5.1.1	74574
1eca	136	70.86		
1sur	215	70.89		
1gweA	503	73.26	e.5.1.1	70667
2pgfA	371	73.46		
2nxoA	291	73.61		
2ouwA	138	76.03		
1fe0A	68	80.58	d.58.17.1	39345
1gbsA	185	81.00	d.2.1.5	36986
1whsA	255	81.56	c.69.1.5	34649
1kfrA	147	81.56	a.1.1.2	72424
2uwxA	494	83.50	e.3.1.1	140002
2yztA	67	83.64		
1qwlA	505	84.57	e.5.1.1	96483
1ppfE	218	86.11	b.47.1.2	26234
1zupA	315	86.62	c.55.3.11	125681