# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1004	a.248.1.1	133507
1w9iA	770	4.545		
2v26A	784	8.893		
1y6uA	70	10.26		
1w7jA	795	17.70	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	18.49		
1xb4A	202	18.68	a.4.5.54,a.4.5.54	121832,121833
1u3eM	174	18.99	d.4.1.3,d.285.1.1	107640,107641
1gbs	185	23.36		
1ik9A	213	26.09	b.59.1.1,h.1.11.1	66176,66177
1fe0A	68	28.12	d.58.17.1	39345
1m85A	484	28.72	e.5.1.1	74578
2gwfB	134	30.74		
2al3A	90	33.44	d.15.1.2	126957
2j01U	118	33.74		
2feaA	236	36.15	c.108.1.20	133327
1qw1A	121	36.75		
1jpyA	137	38.87	g.17.1.6	67065
1aorA	605	41.17	a.110.1.1,d.152.1.1	19042,41794
2oy9A	98	41.71		
2oap1	511	45.81		
1ubkS	267	48.88	e.19.1.1	88423
1dgfA	497	50.69	e.5.1.1	42782
1yhuB	144	51.50		
2nxoA	291	51.83		
2zfoB	142	54.73		
2pgfA	371	55.17		
1x9fB	145	56.08	a.1.1.2	114984
2fzpA	144	56.89		
1ae7A	119	57.52	a.133.1.2	19553
1gbsA	185	57.66	d.2.1.5	36986
1m7sA	484	61.58	e.5.1.1	74574
2oa4A	101	64.23		
2ogbA	126	64.74		
3c8yA	574	67.93		
2d5rB	116	67.93		
1vs3A	249	69.67		
2eqpA	50	70.10		
2nsvA	52	70.43		
2ouwA	138	70.81		
1vehA	92	72.47	d.52.8.1	113635
2zfoC	147	75.59		
1sur	215	76.14		
1vflA	356	79.45	c.1.9.1	120041
1chuA	540	81.30	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
1vbgA	876	81.60	c.1.12.2,c.8.1.1,d.142.1.5	119951,119952,119953
5eau	548	81.91		
1whsA	255	85.50	c.69.1.5	34649
2q0tA	263	86.67		
2f6mA	65	87.62	a.2.17.1	133051
1ecaA	136	88.55	a.1.1.2	15209
2z99A	219	89.24		
1m1qA	91	89.62	a.138.1.3	74419