# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.5084	a.248.1.1	133507
1w9iA	770	16.73		
1w7jA	795	29.94	b.34.3.1,c.37.1.9	120688,120689
1y6uA	70	41.74		
2qebA	145	45.03		
2gwfB	134	55.12		
1ogiA	303	57.61	b.43.4.2,c.25.1.1	92914,92915
1qw1A	121	57.82		
1gweA	503	59.28	e.5.1.1	70667
1ae7A	119	60.39	a.133.1.2	19553
2pgfA	371	61.53		
2fzpA	144	63.54		
2izpA	303	63.77	a.250.1.1	137826
1fehA	574	63.81	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
1x0hA	112	72.28	d.332.1.1	121547
1fndA	314	74.67	b.43.4.2,c.25.1.1	25626,31516
2pytA	133	79.38		
2gokA	429	80.37		
2cwcA	303	80.38		
2ielA	138	83.54		
2pfuA	99	84.74		
2oy9A	98	85.19		
1khyA	148	86.65	a.174.1.1	77410
3cjsB	72	87.94