# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2487	a.248.1.1	133507
1fndA	314	12.44	b.43.4.2,c.25.1.1	25626,31516
1y6uA	70	12.57		
1ogiA	303	13.42	b.43.4.2,c.25.1.1	92914,92915
1qw1A	121	13.71		
2rc5A	314	15.93		
1ae7A	119	18.42	a.133.1.2	19553
1gweA	503	18.51	e.5.1.1	70667
2z99A	219	25.17		
1m85A	484	26.84	e.5.1.1	74578
1m7sA	484	29.51	e.5.1.1	74574
1u3eM	174	32.12	d.4.1.3,d.285.1.1	107640,107641
1vk3A	615	32.81	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1gyoA	109	33.53	a.138.1.1	70763
1ypyA	184	33.85		
1u5uA	374	37.86	e.5.1.2	113052
2pgfA	371	38.61		
1w7jA	795	40.62	b.34.3.1,c.37.1.9	120688,120689
2hqxA	246	40.62	b.34.9.1	136675
1w9iA	770	40.74		
2nxoA	291	41.56		
3c8yA	574	42.14		
2qebA	145	43.04		
1jpyA	137	44.08	g.17.1.6	67065
2e4uA	555	45.93		
2bmwA	304	46.18	b.43.4.2,c.25.1.1	128815,128816
1n28A	124	47.40	a.133.1.2	91550
1guzA	310	49.92	c.2.1.5,d.162.1.1	65586,65587
1zupA	315	52.03	c.55.3.11	125681
1vapA	123	57.02	a.133.1.2	19548
1fehA	574	57.34	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
2yztA	67	57.48		
2gwfB	134	59.31		
2v26A	784	59.45		
2pl2A	217	60.56		
1vffA	423	65.10	c.1.8.4	120033
1vflA	356	67.57	c.1.9.1	120041
2hc1A	291	69.87		
2fzpA	144	76.37		
1vs3A	249	80.18		
2cwcA	303	80.57		
2hbjA	410	80.92	a.60.8.4,c.55.3.5	136311,136312
2cobA	70	82.70	a.4.1.15	130673
1a2aA	122	84.66	a.133.1.2	19540
1s8iA	121	85.48	a.133.1.2	98735
1mc2A	122	87.88	a.133.1.2	74622