# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.000300 a.248.1.1 133507 2rfmA 192 1.930 1jihA 531 1.935 d.240.1.1,e.8.1.7 90374,90375 1fs7A 485 3.221 a.138.1.3 19691 2ooaA 52 3.543 2jabA 136 3.988 2eggA 297 4.112 1ogiA 303 4.380 b.43.4.2,c.25.1.1 92914,92915 1n0qA 93 5.299 k.37.1.1 79754 2pmlX 348 5.324 1khyA 148 6.204 a.174.1.1 77410 2qnuA 226 6.696 1ci4A 89 7.331 a.60.5.1 17970 1b4fA 82 7.442 a.60.1.2 17934 1sctB 151 7.868 a.1.1.2 15003 3bciA 186 8.746 2d5cA 263 10.33 3sdhA 146 10.58 a.1.1.2 14984 1m3kA 392 10.90 c.95.1.1,c.95.1.1 78565,78566 2j01U 118 11.23 2f2sA 406 11.66 1k6kA 143 12.00 a.174.1.1 77274 1yzxA 226 13.61 1mzhA 225 13.88 c.1.10.1 79698 2bkhA 814 14.41 1b0xA 94 14.97 a.60.1.2 17933 1vekA 84 15.93 a.5.2.1 113636 2v26A 784 16.70 1ks9A 291 17.57 a.100.1.7,c.2.1.6 68857,68858 3cswA 285 17.62 1t1dA 100 17.65 d.42.1.2 38637 1y6uA 70 18.19 1u9lA 70 18.77 a.60.4.2 107751 2z8aA 146 18.95 1ujcA 161 19.39 2nxnB 147 19.73 2b5aA 77 19.84 a.35.1.3 127882 2d2mC 147 19.93 2b3zA 373 21.21 c.71.1.2,c.97.1.2 127807,127808 1oy3D 282 21.99 d.211.1.1 87554 1m4tA 392 22.31 c.95.1.1,c.95.1.1 78617,78618 1ufzA 83 22.73 a.5.9.1 107821 2f8yA 223 23.65 1jb9A 316 24.34 b.43.4.2,c.25.1.1 62840,62841 1ub3A 220 24.40 c.1.10.1 88395 2f3nA 76 25.13 a.60.1.2 132885 3cpkA 150 25.63 2zc2A 78 25.85 2b0oE 301 25.98 1r9jA 673 26.12 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1wl4A 397 26.48 1pbjA 125 26.55 d.37.1.1,d.37.1.1 94414,94415 2rfaA 232 26.62 1u4gA 301 27.54 d.92.1.2 107670 2rc5A 314 27.61 1ja1A 622 27.61 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1fipA 98 28.55 a.4.1.12 18980 2esnA 310 28.95 a.4.5.37,c.94.1.1 132333,132334 1bf6A 291 30.67 c.1.9.3 29065 1bedA 181 31.16 c.47.1.13 90330 1wi9A 72 31.52 a.4.5.47 114663 1ccwA 137 32.45 c.23.6.1 31238 2ib8A 395 32.50 1u3eM 174 32.95 d.4.1.3,d.285.1.1 107640,107641 3bs3A 76 33.18 1h7eA 245 33.65 c.68.1.13 60717 1x9fA 151 34.25 a.1.1.2 114983 2dklA 85 37.58 a.5.2.1 131555 1afwA 393 37.81 c.95.1.1,c.95.1.1 35900,35901 2bwbA 46 38.06 a.5.2.1 129329 1tueA 212 38.30 c.37.1.20 107323 2o1sA 621 39.50 1bx1A 314 40.18 b.43.4.2,c.25.1.1 25629,31519 1v38A 78 40.29 a.60.1.2 100280 2nvwA 479 40.45 c.2.1.3,d.81.1.5 138665,138666 2i5uA 83 41.15 3c5rA 137 41.75 1zv1A 65 43.29 1vqtA 213 43.81 c.1.2.3 120417 1a0gA 282 44.37 e.17.1.1 43276 1i7kA 179 44.50 d.20.1.1 61889 2ppxA 99 45.17 1ig0A 319 46.25 b.82.6.1,c.100.1.1 62354,62355 2ekcA 262 50.27 1wdkC 390 51.47 c.95.1.1,c.95.1.1 109258,109259 2zfoC 147 52.01 1s5uA 138 52.26 d.38.1.1 98573 1ig3A 263 53.30 b.82.6.1,c.100.1.1 62358,62359 2r5nA 669 56.48 2nlyA 245 58.05 c.6.2.7 138364 2jgqA 233 58.31 2igiA 180 58.87 1xzoA 174 59.15 c.47.1.10 122474 2fb2A 340 60.06 3cnhA 200 61.14 1kfrA 147 61.21 a.1.1.2 72424 2hdoA 209 61.93 c.108.1.6 136345 1o0yA 260 63.61 c.1.10.1 80756 2v79A 135 63.70 2bmwA 304 64.49 b.43.4.2,c.25.1.1 128815,128816 1pdo 135 64.76 1zzgA 415 68.07 1rvkA 382 68.07 c.1.11.2,d.54.1.1 97928,97929 2o8xA 70 68.79 2fi9A 128 69.59 c.103.1.1 133513 1i3jA 116 70.24 d.285.1.1 61594 1sd4A 126 72.08 a.4.5.39 105428 1vg5A 73 73.40 a.5.2.1 113640 2hk9A 275 74.13 2xatA 212 75.97 b.81.1.3 28058 1wrvA 308 76.28 2r0bA 154 76.35 2b4lA 268 76.59 2ijlA 135 77.61 2yxbA 161 78.03 2zfoA 140 78.14 1tw3A 360 79.61 a.4.5.29,c.66.1.12 107373,107374 2ivsA 314 80.08 2g9wA 138 81.68 2h5xA 196 82.22 2eiyA 308 82.52 2hxpA 155 82.63 1iyeA 309 83.91 e.17.1.1 83786 1nytA 271 84.58 c.2.1.7,c.58.1.5 86417,86418 2dbbA 151 85.14 2awpA 198 85.52 1xn7A 78 85.80 a.4.5.62 115576 2nt2A 145 86.07 1ngr 85 87.26 1qzzA 374 87.96 a.4.5.29,c.66.1.12 96719,96720 1r29A 127 89.07 d.42.1.1 96856 1y0eA 223 89.15 c.1.2.5 116297