# TARGET T0473 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0473.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.0607 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.009 0.018 0.563 0.009 0.012 0.005 0.004 0.002 0.055 0.139 0.018 0.097 0.069 2 K 0.009 0.028 0.570 0.004 0.008 0.005 0.007 0.003 0.075 0.053 0.011 0.059 0.167 3 I 0.008 0.060 0.535 0.007 0.018 0.013 0.011 0.008 0.120 0.052 0.015 0.041 0.114 4 T 0.001 0.003 0.840 0.009 0.021 0.010 0.001 0.001 0.015 0.045 0.012 0.025 0.018 5 K 0.001 0.004 0.113 0.006 0.203 0.170 0.001 0.001 0.011 0.111 0.368 0.003 0.010 6 D 0.001 0.010 0.221 0.006 0.083 0.272 0.001 0.001 0.011 0.161 0.221 0.005 0.009 7 M 0.004 0.038 0.316 0.002 0.042 0.331 0.001 0.001 0.018 0.187 0.020 0.024 0.016 8 I 0.009 0.029 0.431 0.001 0.012 0.321 0.002 0.001 0.023 0.053 0.012 0.023 0.083 9 I 0.001 0.007 0.019 0.002 0.020 0.904 0.001 0.001 0.002 0.005 0.020 0.002 0.014 10 A 0.002 0.001 0.004 0.003 0.025 0.949 0.001 0.001 0.001 0.003 0.009 0.003 0.001 11 D 0.002 0.001 0.003 0.001 0.033 0.943 0.001 0.001 0.001 0.002 0.009 0.001 0.005 12 V 0.002 0.001 0.003 0.001 0.036 0.934 0.001 0.001 0.001 0.001 0.019 0.001 0.002 13 L 0.002 0.002 0.007 0.002 0.040 0.876 0.001 0.001 0.001 0.004 0.054 0.002 0.009 14 Q 0.002 0.001 0.017 0.001 0.045 0.797 0.001 0.001 0.001 0.013 0.108 0.005 0.008 15 M 0.003 0.019 0.089 0.002 0.027 0.635 0.001 0.001 0.004 0.073 0.125 0.008 0.014 16 D 0.001 0.003 0.761 0.001 0.007 0.084 0.001 0.001 0.001 0.109 0.019 0.005 0.010 17 R 0.001 0.001 0.028 0.001 0.063 0.464 0.001 0.001 0.001 0.013 0.430 0.001 0.001 18 G 0.001 0.002 0.032 0.001 0.066 0.300 0.001 0.001 0.001 0.060 0.536 0.001 0.001 19 T 0.001 0.009 0.250 0.001 0.052 0.553 0.001 0.001 0.003 0.075 0.045 0.001 0.011 20 A 0.001 0.009 0.176 0.002 0.007 0.699 0.001 0.001 0.006 0.065 0.020 0.008 0.006 21 P 0.003 0.012 0.046 0.003 0.016 0.807 0.001 0.001 0.014 0.032 0.024 0.004 0.038 22 I 0.006 0.003 0.010 0.002 0.025 0.891 0.002 0.001 0.005 0.004 0.020 0.013 0.018 23 F 0.015 0.006 0.005 0.005 0.055 0.834 0.003 0.003 0.004 0.002 0.023 0.005 0.041 24 I 0.005 0.005 0.005 0.007 0.062 0.865 0.002 0.001 0.002 0.002 0.024 0.014 0.007 25 N 0.011 0.004 0.013 0.004 0.049 0.802 0.001 0.002 0.004 0.010 0.074 0.012 0.014 26 N 0.002 0.001 0.017 0.008 0.012 0.242 0.001 0.001 0.001 0.043 0.667 0.004 0.003 27 G 0.001 0.002 0.033 0.001 0.005 0.020 0.001 0.001 0.001 0.061 0.872 0.002 0.001 28 M 0.001 0.020 0.613 0.003 0.014 0.030 0.001 0.001 0.003 0.235 0.052 0.013 0.013 29 H 0.003 0.062 0.456 0.003 0.034 0.059 0.003 0.004 0.033 0.180 0.087 0.035 0.041 30 C 0.004 0.041 0.348 0.009 0.135 0.094 0.005 0.013 0.046 0.082 0.149 0.018 0.054 31 L 0.004 0.019 0.279 0.018 0.097 0.066 0.004 0.008 0.026 0.180 0.255 0.026 0.017 32 G 0.005 0.023 0.313 0.004 0.030 0.037 0.002 0.003 0.023 0.328 0.191 0.014 0.026 33 C 0.001 0.014 0.622 0.001 0.019 0.018 0.001 0.001 0.011 0.265 0.021 0.013 0.013 34 P 0.001 0.023 0.390 0.004 0.112 0.119 0.001 0.001 0.009 0.168 0.140 0.006 0.025 35 S 0.002 0.019 0.122 0.004 0.266 0.214 0.001 0.001 0.006 0.106 0.248 0.005 0.007 36 S 0.003 0.013 0.161 0.003 0.263 0.229 0.001 0.001 0.003 0.104 0.208 0.004 0.008 37 M 0.002 0.015 0.136 0.003 0.098 0.306 0.001 0.001 0.004 0.093 0.327 0.003 0.011 38 G 0.001 0.009 0.108 0.002 0.027 0.495 0.001 0.001 0.004 0.105 0.239 0.004 0.005 39 E 0.002 0.015 0.114 0.001 0.020 0.588 0.001 0.001 0.004 0.180 0.062 0.006 0.007 40 S 0.001 0.015 0.155 0.001 0.018 0.713 0.001 0.001 0.003 0.042 0.024 0.003 0.025 41 I 0.001 0.001 0.010 0.001 0.007 0.970 0.001 0.001 0.001 0.003 0.007 0.001 0.001 42 E 0.001 0.001 0.001 0.001 0.007 0.986 0.001 0.001 0.001 0.001 0.004 0.001 0.001 43 D 0.001 0.001 0.002 0.001 0.010 0.977 0.001 0.001 0.001 0.002 0.005 0.001 0.002 44 A 0.001 0.001 0.001 0.001 0.005 0.983 0.001 0.001 0.001 0.001 0.008 0.001 0.001 45 C 0.001 0.001 0.001 0.001 0.030 0.927 0.001 0.001 0.001 0.001 0.038 0.001 0.002 46 A 0.001 0.001 0.001 0.001 0.023 0.942 0.001 0.001 0.001 0.001 0.030 0.001 0.001 47 V 0.002 0.002 0.005 0.001 0.070 0.855 0.001 0.001 0.001 0.004 0.057 0.001 0.002 48 H 0.001 0.002 0.017 0.001 0.028 0.289 0.001 0.001 0.001 0.036 0.622 0.002 0.002 49 G 0.001 0.005 0.105 0.001 0.014 0.072 0.001 0.001 0.002 0.072 0.725 0.001 0.002 50 I 0.001 0.030 0.612 0.001 0.005 0.045 0.001 0.001 0.003 0.274 0.026 0.003 0.002 51 D 0.001 0.003 0.830 0.001 0.002 0.011 0.001 0.001 0.002 0.144 0.005 0.001 0.002 52 A 0.001 0.001 0.019 0.001 0.090 0.842 0.001 0.001 0.001 0.005 0.044 0.001 0.001 53 D 0.001 0.001 0.003 0.001 0.030 0.953 0.001 0.001 0.001 0.006 0.008 0.001 0.001 54 K 0.001 0.001 0.002 0.001 0.099 0.892 0.001 0.001 0.001 0.003 0.002 0.001 0.001 55 L 0.001 0.001 0.003 0.001 0.007 0.976 0.001 0.001 0.001 0.003 0.009 0.001 0.001 56 V 0.001 0.001 0.001 0.001 0.009 0.976 0.001 0.001 0.001 0.001 0.013 0.001 0.001 57 K 0.001 0.001 0.001 0.001 0.016 0.949 0.001 0.001 0.001 0.001 0.035 0.001 0.001 58 E 0.001 0.001 0.001 0.001 0.006 0.978 0.001 0.001 0.001 0.001 0.015 0.001 0.001 59 L 0.001 0.001 0.001 0.001 0.003 0.987 0.001 0.001 0.001 0.001 0.007 0.001 0.001 60 N 0.001 0.001 0.002 0.001 0.006 0.872 0.001 0.001 0.001 0.003 0.117 0.001 0.001 61 E 0.001 0.001 0.002 0.001 0.010 0.803 0.001 0.001 0.001 0.001 0.184 0.001 0.001 62 Y 0.001 0.001 0.007 0.001 0.033 0.924 0.001 0.001 0.001 0.006 0.030 0.001 0.001 63 F 0.001 0.001 0.008 0.001 0.032 0.897 0.001 0.001 0.001 0.007 0.054 0.001 0.001 64 E 0.001 0.001 0.016 0.001 0.055 0.810 0.001 0.001 0.004 0.011 0.102 0.001 0.001 65 K 0.001 0.002 0.050 0.001 0.067 0.707 0.001 0.001 0.006 0.040 0.123 0.001 0.003 66 K 0.001 0.006 0.166 0.001 0.057 0.455 0.001 0.001 0.011 0.091 0.205 0.003 0.005 67 E 0.001 0.012 0.382 0.001 0.057 0.245 0.001 0.001 0.020 0.131 0.135 0.005 0.010 68 V 0.001 0.008 0.616 0.002 0.048 0.112 0.001 0.001 0.015 0.118 0.059 0.008 0.013