# TARGET T0473 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0473.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.0607 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.104 0.035 0.332 0.419 0.002 0.008 0.004 0.009 0.005 0.003 0.005 0.010 0.018 0.001 0.019 0.026 2 K 0.027 0.021 0.327 0.424 0.008 0.094 0.002 0.001 0.009 0.003 0.002 0.002 0.014 0.001 0.001 0.066 3 I 0.038 0.070 0.064 0.729 0.023 0.031 0.002 0.004 0.001 0.001 0.022 0.004 0.008 0.001 0.001 0.004 4 T 0.001 0.016 0.004 0.012 0.009 0.927 0.001 0.004 0.001 0.001 0.003 0.017 0.004 0.001 0.001 0.001 5 K 0.001 0.005 0.001 0.009 0.001 0.003 0.001 0.008 0.001 0.001 0.957 0.003 0.008 0.001 0.001 0.001 6 D 0.003 0.087 0.012 0.027 0.001 0.005 0.001 0.003 0.013 0.001 0.003 0.814 0.007 0.001 0.013 0.010 7 M 0.018 0.006 0.749 0.050 0.001 0.002 0.011 0.001 0.001 0.001 0.003 0.004 0.065 0.001 0.004 0.086 8 I 0.028 0.003 0.087 0.018 0.008 0.675 0.010 0.002 0.001 0.001 0.012 0.015 0.132 0.003 0.001 0.005 9 I 0.002 0.006 0.004 0.013 0.004 0.066 0.001 0.004 0.001 0.001 0.813 0.011 0.068 0.006 0.001 0.001 10 A 0.001 0.052 0.001 0.015 0.001 0.005 0.001 0.002 0.001 0.001 0.027 0.762 0.122 0.001 0.008 0.002 11 D 0.001 0.002 0.007 0.013 0.001 0.003 0.002 0.001 0.002 0.001 0.005 0.022 0.907 0.002 0.003 0.031 12 V 0.007 0.003 0.040 0.009 0.001 0.005 0.010 0.001 0.001 0.001 0.009 0.019 0.854 0.010 0.003 0.030 13 L 0.002 0.005 0.040 0.013 0.001 0.005 0.008 0.002 0.001 0.001 0.003 0.013 0.876 0.005 0.016 0.010 14 Q 0.003 0.011 0.029 0.049 0.006 0.020 0.025 0.002 0.002 0.001 0.009 0.003 0.688 0.040 0.010 0.104 15 M 0.026 0.073 0.087 0.084 0.002 0.015 0.018 0.010 0.004 0.001 0.022 0.033 0.493 0.010 0.050 0.074 16 D 0.008 0.006 0.023 0.008 0.032 0.325 0.153 0.003 0.003 0.010 0.012 0.020 0.295 0.082 0.005 0.016 17 R 0.009 0.011 0.007 0.006 0.001 0.022 0.001 0.043 0.001 0.001 0.670 0.013 0.172 0.002 0.039 0.003 18 G 0.001 0.026 0.003 0.004 0.001 0.006 0.001 0.001 0.014 0.009 0.025 0.823 0.070 0.001 0.001 0.014 19 T 0.044 0.004 0.031 0.010 0.001 0.006 0.002 0.001 0.001 0.001 0.034 0.062 0.792 0.001 0.009 0.005 20 A 0.001 0.004 0.061 0.013 0.001 0.012 0.001 0.001 0.001 0.001 0.023 0.043 0.833 0.001 0.001 0.007 21 P 0.001 0.002 0.005 0.025 0.001 0.005 0.002 0.001 0.001 0.001 0.006 0.017 0.937 0.001 0.001 0.001 22 I 0.001 0.001 0.002 0.035 0.001 0.005 0.001 0.001 0.001 0.001 0.004 0.012 0.939 0.001 0.001 0.001 23 F 0.001 0.001 0.002 0.016 0.001 0.003 0.005 0.001 0.001 0.001 0.002 0.008 0.962 0.001 0.001 0.001 24 I 0.001 0.001 0.002 0.011 0.009 0.004 0.008 0.002 0.001 0.001 0.002 0.001 0.941 0.017 0.002 0.001 25 N 0.001 0.001 0.001 0.002 0.019 0.001 0.020 0.003 0.001 0.001 0.003 0.001 0.073 0.869 0.004 0.005 26 N 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.038 0.001 0.001 0.001 0.002 0.038 0.006 0.896 0.007 27 G 0.005 0.005 0.020 0.002 0.002 0.002 0.012 0.001 0.040 0.017 0.004 0.002 0.032 0.016 0.008 0.833 28 M 0.869 0.007 0.018 0.006 0.002 0.003 0.010 0.005 0.001 0.001 0.004 0.005 0.027 0.006 0.025 0.011 29 H 0.020 0.067 0.650 0.031 0.004 0.051 0.010 0.010 0.010 0.009 0.008 0.013 0.048 0.002 0.013 0.055 30 C 0.036 0.021 0.030 0.045 0.171 0.248 0.170 0.005 0.007 0.014 0.087 0.027 0.065 0.060 0.002 0.010 31 L 0.014 0.108 0.033 0.069 0.012 0.044 0.012 0.345 0.003 0.001 0.128 0.073 0.057 0.006 0.090 0.003 32 G 0.006 0.150 0.034 0.141 0.002 0.015 0.009 0.009 0.311 0.061 0.022 0.104 0.028 0.002 0.007 0.100 33 C 0.422 0.013 0.143 0.044 0.004 0.074 0.015 0.004 0.010 0.008 0.019 0.056 0.169 0.002 0.007 0.011 34 P 0.030 0.034 0.153 0.057 0.012 0.117 0.008 0.012 0.002 0.002 0.335 0.043 0.170 0.008 0.004 0.010 35 S 0.012 0.104 0.027 0.093 0.009 0.074 0.010 0.013 0.011 0.003 0.113 0.370 0.127 0.009 0.012 0.013 36 S 0.005 0.019 0.049 0.034 0.064 0.022 0.253 0.007 0.004 0.004 0.048 0.090 0.223 0.143 0.017 0.018 37 M 0.010 0.022 0.061 0.032 0.001 0.032 0.009 0.119 0.002 0.002 0.063 0.075 0.352 0.002 0.182 0.036 38 G 0.010 0.009 0.034 0.026 0.002 0.076 0.013 0.002 0.081 0.026 0.057 0.064 0.462 0.005 0.003 0.132 39 E 0.222 0.099 0.165 0.078 0.001 0.007 0.003 0.005 0.001 0.001 0.041 0.077 0.284 0.001 0.008 0.008 40 S 0.001 0.001 0.002 0.001 0.001 0.753 0.002 0.001 0.001 0.001 0.009 0.042 0.189 0.001 0.001 0.001 41 I 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.763 0.008 0.222 0.001 0.001 0.001 42 E 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.817 0.156 0.001 0.002 0.001 43 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.002 44 A 0.001 0.001 0.019 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.969 0.001 0.002 0.002 45 C 0.001 0.001 0.003 0.004 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.003 0.978 0.002 0.002 0.003 46 A 0.001 0.001 0.001 0.006 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.970 0.008 0.001 0.006 47 V 0.001 0.001 0.001 0.001 0.006 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.016 0.957 0.001 0.002 48 H 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.020 0.001 0.001 0.001 0.002 0.023 0.001 0.931 0.009 49 G 0.001 0.001 0.018 0.002 0.001 0.003 0.002 0.001 0.014 0.002 0.001 0.001 0.008 0.001 0.001 0.946 50 I 0.908 0.020 0.042 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.006 0.001 0.001 0.003 51 D 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.001 0.003 0.006 0.001 0.001 0.001 52 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.002 0.001 0.001 0.001 53 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 54 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 55 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 56 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 57 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 58 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 59 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 60 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 61 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 62 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.990 0.002 0.002 0.003 63 F 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.982 0.004 0.004 0.005 64 E 0.001 0.001 0.006 0.003 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.893 0.044 0.008 0.029 65 K 0.006 0.005 0.017 0.007 0.001 0.006 0.015 0.002 0.001 0.001 0.006 0.007 0.793 0.027 0.043 0.066 66 K 0.013 0.014 0.068 0.015 0.002 0.019 0.033 0.003 0.004 0.001 0.019 0.015 0.636 0.025 0.029 0.105 67 E 0.042 0.037 0.070 0.027 0.015 0.036 0.084 0.008 0.003 0.002 0.043 0.030 0.414 0.099 0.032 0.059 68 V 0.029 0.093 0.132 0.066 0.008 0.048 0.045 0.037 0.008 0.003 0.047 0.057 0.248 0.027 0.095 0.056