# TARGET T0473 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0473.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.0607 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.005 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.262 0.026 0.113 0.571 2 K 0.008 0.009 0.001 0.001 0.004 0.006 0.003 0.001 0.007 0.004 0.003 0.001 0.002 0.001 0.001 0.003 0.135 0.025 0.104 0.682 3 I 0.011 0.006 0.002 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.198 0.020 0.086 0.660 4 T 0.630 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.045 0.096 0.030 0.162 5 K 0.052 0.087 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.085 0.054 0.098 0.621 6 D 0.012 0.050 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.010 0.106 0.777 7 M 0.007 0.165 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.385 0.046 0.071 0.311 8 I 0.027 0.747 0.002 0.001 0.001 0.001 0.001 0.001 0.005 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.035 0.035 0.095 9 I 0.030 0.904 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.015 0.007 0.028 10 A 0.026 0.790 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.019 0.055 0.012 0.088 11 D 0.109 0.571 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.050 0.075 0.045 0.132 12 V 0.174 0.405 0.020 0.001 0.001 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.118 0.039 0.190 13 L 0.180 0.073 0.010 0.002 0.002 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.077 0.092 0.500 14 Q 0.023 0.007 0.002 0.001 0.011 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.020 0.060 0.861 15 M 0.009 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.019 0.125 0.824 16 D 0.345 0.153 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.120 0.079 0.282 17 R 0.077 0.149 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.030 0.108 0.619 18 G 0.020 0.237 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.025 0.092 0.594 19 T 0.025 0.486 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.036 0.019 0.061 0.358 20 A 0.033 0.706 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.059 0.029 0.036 0.128 21 P 0.033 0.428 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.002 0.020 0.007 0.006 0.001 0.113 0.204 0.028 0.140 22 I 0.047 0.205 0.009 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.013 0.013 0.005 0.210 0.340 0.027 0.117 23 F 0.040 0.024 0.183 0.003 0.079 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.004 0.002 0.113 0.383 0.027 0.132 24 I 0.624 0.004 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.070 0.022 0.034 0.237 25 N 0.175 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.033 0.062 0.696 26 N 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.012 0.269 0.679 27 G 0.019 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.174 0.054 0.148 0.590 28 M 0.014 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.013 0.002 0.001 0.001 0.001 0.001 0.001 0.085 0.054 0.166 0.599 29 H 0.030 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.003 0.001 0.005 0.002 0.001 0.001 0.585 0.075 0.046 0.235 30 C 0.131 0.006 0.001 0.001 0.001 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.018 0.008 0.002 0.001 0.141 0.191 0.087 0.403 31 L 0.005 0.007 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.328 0.051 0.120 0.477 32 G 0.023 0.027 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.136 0.149 0.109 0.547 33 C 0.087 0.027 0.005 0.001 0.002 0.003 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.094 0.290 0.107 0.378 34 P 0.143 0.059 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.092 0.110 0.527 35 S 0.105 0.066 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.045 0.108 0.612 36 S 0.090 0.027 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.056 0.169 0.123 0.521 37 M 0.020 0.215 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.052 0.074 0.086 0.539 38 G 0.050 0.437 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.016 0.030 0.065 0.392 39 E 0.012 0.449 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.089 0.118 0.061 0.253 40 S 0.009 0.923 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.027 0.007 0.027 41 I 0.014 0.961 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.002 0.009 42 E 0.012 0.917 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.035 0.003 0.027 43 D 0.024 0.868 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.043 0.008 0.044 44 A 0.063 0.525 0.071 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.225 0.019 0.081 45 C 0.097 0.048 0.266 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.371 0.026 0.177 46 A 0.411 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.039 0.534 47 V 0.034 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.018 0.052 0.887 48 H 0.015 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.010 0.158 0.801 49 G 0.011 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.067 0.907 50 I 0.002 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.008 0.144 0.802 51 D 0.015 0.951 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.002 0.020 52 A 0.014 0.971 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.004 53 D 0.004 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.001 0.012 54 K 0.011 0.937 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.001 0.008 55 L 0.008 0.963 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.001 0.003 56 V 0.008 0.524 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.454 0.001 0.007 57 K 0.013 0.911 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.002 0.019 58 E 0.013 0.949 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.002 0.011 59 L 0.011 0.910 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.003 0.012 60 N 0.018 0.886 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.004 0.031 61 E 0.033 0.832 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.037 0.014 0.074 62 Y 0.066 0.668 0.049 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.108 0.023 0.081 63 F 0.196 0.403 0.048 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.118 0.040 0.185 64 E 0.155 0.130 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.073 0.052 0.568 65 K 0.094 0.032 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.061 0.095 0.702 66 K 0.100 0.031 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.051 0.127 0.667 67 E 0.055 0.025 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.044 0.109 0.743 68 V 0.040 0.027 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.048 0.124 0.713