# TARGET T0473 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0473.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.0607 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.070 0.016 0.010 0.002 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.009 0.005 0.002 0.089 0.006 0.044 0.738 2 K 0.016 0.010 0.006 0.002 0.006 0.002 0.002 0.002 0.001 0.001 0.002 0.001 0.013 0.011 0.009 0.003 0.258 0.003 0.107 0.547 3 I 0.012 0.005 0.001 0.001 0.005 0.002 0.001 0.001 0.002 0.004 0.002 0.001 0.002 0.001 0.001 0.001 0.296 0.002 0.066 0.593 4 T 0.012 0.018 0.002 0.001 0.002 0.001 0.003 0.002 0.039 0.018 0.006 0.003 0.002 0.001 0.001 0.003 0.358 0.006 0.118 0.407 5 K 0.007 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.085 0.002 0.049 0.843 6 D 0.032 0.018 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.070 0.019 0.438 0.416 7 M 0.359 0.027 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.026 0.153 0.349 8 I 0.061 0.148 0.007 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.086 0.004 0.284 0.403 9 I 0.038 0.191 0.011 0.001 0.019 0.005 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.190 0.013 0.126 0.396 10 A 0.027 0.396 0.005 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.098 0.009 0.079 0.377 11 D 0.037 0.499 0.007 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.053 0.020 0.113 0.265 12 V 0.059 0.744 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.013 0.015 0.137 13 L 0.018 0.863 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.037 0.007 0.016 0.055 14 Q 0.079 0.730 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.030 0.044 0.015 0.089 15 M 0.305 0.460 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.057 0.011 0.105 16 D 0.190 0.370 0.052 0.002 0.001 0.001 0.001 0.001 0.008 0.011 0.005 0.001 0.001 0.001 0.001 0.001 0.036 0.065 0.044 0.215 17 R 0.027 0.066 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.007 0.020 0.822 18 G 0.015 0.060 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.015 0.431 0.421 19 T 0.669 0.017 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.077 0.075 0.137 20 A 0.161 0.298 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.088 0.009 0.088 0.320 21 P 0.001 0.003 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.989 22 I 0.031 0.097 0.006 0.001 0.019 0.050 0.009 0.004 0.001 0.001 0.001 0.001 0.013 0.043 0.013 0.005 0.167 0.011 0.064 0.464 23 F 0.076 0.428 0.004 0.001 0.001 0.001 0.007 0.003 0.001 0.001 0.006 0.001 0.031 0.015 0.006 0.002 0.120 0.011 0.048 0.235 24 I 0.030 0.483 0.002 0.001 0.001 0.001 0.001 0.001 0.011 0.023 0.004 0.001 0.005 0.001 0.001 0.001 0.224 0.009 0.031 0.170 25 N 0.027 0.413 0.004 0.001 0.001 0.001 0.001 0.001 0.048 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.216 0.014 0.045 0.222 26 N 0.088 0.343 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.153 0.085 0.057 0.264 27 G 0.273 0.069 0.040 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.285 0.039 0.244 28 M 0.090 0.040 0.502 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.021 0.063 0.246 29 H 0.026 0.054 0.026 0.008 0.006 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.252 0.009 0.161 0.452 30 C 0.099 0.052 0.011 0.005 0.037 0.010 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.070 0.012 0.095 0.596 31 L 0.080 0.087 0.010 0.002 0.002 0.004 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.206 0.013 0.118 0.462 32 G 0.087 0.047 0.006 0.002 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.161 0.017 0.084 0.582 33 C 0.138 0.022 0.014 0.002 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.001 0.110 0.007 0.131 0.559 34 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.995 35 S 0.042 0.015 0.002 0.001 0.004 0.002 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.148 0.005 0.088 0.683 36 S 0.193 0.054 0.003 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.010 0.123 0.544 37 M 0.238 0.112 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.012 0.080 0.505 38 G 0.244 0.167 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.024 0.088 0.425 39 E 0.251 0.109 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.005 0.285 0.290 40 S 0.027 0.178 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.003 0.161 0.615 41 I 0.062 0.470 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.021 0.028 0.348 42 E 0.010 0.730 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.002 0.110 0.136 43 D 0.013 0.595 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.318 0.068 44 A 0.027 0.955 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.010 45 C 0.005 0.983 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.008 46 A 0.009 0.964 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.018 47 V 0.042 0.933 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.014 48 H 0.127 0.809 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.043 0.001 0.018 49 G 0.526 0.179 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.110 0.008 0.136 50 I 0.031 0.011 0.828 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.028 0.091 51 D 0.004 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.619 0.356 52 A 0.005 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.061 0.910 53 D 0.003 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.535 0.435 54 K 0.015 0.039 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.848 0.097 55 L 0.010 0.971 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 56 V 0.001 0.984 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 57 K 0.001 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 58 E 0.009 0.983 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.005 59 L 0.014 0.977 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.003 60 N 0.012 0.961 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.015 61 E 0.019 0.912 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.001 0.043 62 Y 0.040 0.890 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.051 63 F 0.022 0.917 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.006 0.045 64 E 0.050 0.878 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.011 0.003 0.053 65 K 0.093 0.822 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.020 0.001 0.059 66 K 0.159 0.658 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.040 0.005 0.124 67 E 0.162 0.441 0.063 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.032 0.029 0.258 68 V 0.116 0.296 0.058 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.024 0.038 0.419