# TARGET T0473 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0473.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.0607 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.050 0.378 0.291 0.034 0.166 0.030 0.023 0.006 0.016 0.005 0.001 2 K 0.066 0.369 0.370 0.018 0.035 0.101 0.017 0.001 0.020 0.001 0.002 3 I 0.057 0.423 0.334 0.022 0.015 0.119 0.004 0.001 0.024 0.001 0.001 4 T 0.174 0.240 0.262 0.133 0.046 0.084 0.014 0.002 0.038 0.005 0.002 5 K 0.484 0.117 0.148 0.104 0.065 0.017 0.032 0.005 0.017 0.009 0.002 6 D 0.307 0.110 0.138 0.220 0.043 0.045 0.111 0.013 0.011 0.002 0.001 7 M 0.312 0.231 0.241 0.076 0.079 0.026 0.018 0.004 0.011 0.002 0.001 8 I 0.363 0.229 0.250 0.029 0.013 0.094 0.006 0.001 0.015 0.001 0.001 9 I 0.833 0.069 0.046 0.020 0.002 0.023 0.001 0.001 0.004 0.001 0.001 10 A 0.923 0.020 0.017 0.025 0.005 0.004 0.003 0.001 0.002 0.001 0.001 11 D 0.897 0.032 0.018 0.022 0.015 0.005 0.006 0.001 0.004 0.001 0.001 12 V 0.957 0.018 0.011 0.007 0.001 0.004 0.001 0.001 0.002 0.001 0.001 13 L 0.886 0.039 0.024 0.038 0.003 0.005 0.002 0.001 0.003 0.001 0.001 14 Q 0.641 0.079 0.070 0.106 0.035 0.024 0.028 0.002 0.011 0.002 0.001 15 M 0.545 0.089 0.103 0.208 0.018 0.017 0.006 0.001 0.011 0.001 0.001 16 D 0.085 0.052 0.367 0.038 0.028 0.076 0.018 0.002 0.319 0.013 0.001 17 R 0.867 0.001 0.076 0.046 0.001 0.001 0.001 0.001 0.001 0.001 0.005 18 G 0.644 0.004 0.021 0.086 0.019 0.003 0.050 0.147 0.001 0.025 0.001 19 T 0.495 0.038 0.063 0.376 0.006 0.011 0.006 0.001 0.004 0.001 0.001 20 A 0.688 0.105 0.131 0.014 0.010 0.009 0.008 0.001 0.034 0.001 0.001 21 P 0.874 0.005 0.104 0.003 0.002 0.008 0.002 0.001 0.001 0.001 0.001 22 I 0.901 0.066 0.013 0.006 0.001 0.007 0.001 0.001 0.005 0.001 0.001 23 F 0.887 0.034 0.047 0.010 0.004 0.011 0.001 0.001 0.006 0.001 0.001 24 I 0.885 0.032 0.028 0.040 0.002 0.006 0.002 0.001 0.005 0.001 0.001 25 N 0.821 0.017 0.017 0.101 0.011 0.006 0.014 0.004 0.005 0.003 0.001 26 N 0.173 0.010 0.021 0.740 0.006 0.003 0.040 0.002 0.005 0.001 0.001 27 G 0.026 0.003 0.012 0.012 0.025 0.003 0.183 0.645 0.003 0.088 0.001 28 M 0.209 0.154 0.372 0.185 0.020 0.030 0.015 0.002 0.009 0.002 0.002 29 H 0.221 0.128 0.322 0.167 0.035 0.061 0.026 0.011 0.014 0.008 0.005 30 C 0.236 0.260 0.252 0.085 0.040 0.056 0.010 0.004 0.052 0.004 0.001 31 L 0.281 0.136 0.237 0.270 0.012 0.018 0.027 0.001 0.012 0.001 0.006 32 G 0.067 0.025 0.079 0.071 0.170 0.019 0.066 0.310 0.009 0.183 0.002 33 C 0.026 0.189 0.463 0.008 0.046 0.018 0.010 0.001 0.233 0.005 0.001 34 P 0.538 0.004 0.364 0.018 0.003 0.010 0.001 0.001 0.001 0.005 0.055 35 S 0.472 0.095 0.144 0.155 0.056 0.014 0.025 0.020 0.013 0.005 0.001 36 S 0.550 0.108 0.179 0.082 0.030 0.017 0.006 0.003 0.021 0.003 0.001 37 M 0.489 0.074 0.123 0.248 0.016 0.014 0.022 0.001 0.010 0.001 0.001 38 G 0.374 0.020 0.064 0.041 0.059 0.016 0.109 0.264 0.003 0.048 0.001 39 E 0.763 0.128 0.062 0.022 0.008 0.008 0.005 0.001 0.004 0.001 0.001 40 S 0.559 0.068 0.235 0.013 0.015 0.097 0.002 0.001 0.010 0.001 0.001 41 I 0.984 0.003 0.003 0.007 0.001 0.003 0.001 0.001 0.001 0.001 0.001 42 E 0.995 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 D 0.982 0.002 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 A 0.984 0.002 0.003 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 C 0.987 0.004 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 A 0.987 0.004 0.003 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 47 V 0.881 0.013 0.012 0.086 0.002 0.002 0.001 0.001 0.003 0.001 0.001 48 H 0.246 0.026 0.054 0.580 0.015 0.007 0.054 0.004 0.012 0.001 0.001 49 G 0.053 0.006 0.042 0.040 0.039 0.015 0.284 0.421 0.002 0.098 0.001 50 I 0.453 0.215 0.195 0.082 0.021 0.018 0.007 0.001 0.006 0.002 0.001 51 D 0.027 0.027 0.565 0.007 0.017 0.268 0.004 0.001 0.080 0.004 0.001 52 A 0.979 0.001 0.010 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 D 0.991 0.003 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 K 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 L 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 V 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 E 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 L 0.969 0.001 0.001 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 N 0.989 0.002 0.003 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 61 E 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 Y 0.847 0.002 0.005 0.143 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 F 0.846 0.014 0.023 0.096 0.002 0.004 0.008 0.001 0.006 0.001 0.001 64 E 0.846 0.017 0.034 0.069 0.003 0.006 0.020 0.001 0.003 0.001 0.001 65 K 0.701 0.031 0.058 0.175 0.007 0.008 0.011 0.003 0.006 0.001 0.001 66 K 0.630 0.056 0.145 0.107 0.008 0.012 0.025 0.004 0.011 0.001 0.001 67 E 0.507 0.105 0.192 0.118 0.011 0.022 0.030 0.003 0.010 0.001 0.001 68 V 0.347 0.203 0.239 0.126 0.027 0.022 0.017 0.003 0.014 0.002 0.001