# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.08656	a.248.1.1	133507
1y6uA	70	6.865		
1u3eM	174	7.234	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	8.314	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	10.23		
1s69A	124	10.63	a.1.1.1	105305
2akaA	776	13.76		
1mvwA	840	13.87	i.15.1.1	79523
1d0yA	761	16.23	b.34.3.1,c.37.1.9	24581,32178
1r9lA	309	16.68	c.94.1.1	97262
1idrA	136	17.35	a.1.1.1	62301
1dlwA	116	19.13	a.1.1.1	14982
1f0nA	285	22.12	c.69.1.3	34636
2d2mA	140	22.39		
3b5mA	205	25.10		
2f6mA	65	27.14	a.2.17.1	133051
2aa1A	144	29.58	a.1.1.2	126463
3c8yA	574	30.61		
1w9iA	770	33.27		
1y75B	118	35.74		
2al3A	90	36.82	d.15.1.2	126957
2gwfB	134	37.20		
2ouwA	138	37.32		
1xb4A	202	37.49	a.4.5.54,a.4.5.54	121832,121833
1yhuB	144	41.05		
2v26A	784	43.66		
2amxA	376	51.78	c.1.9.1	127024
1e39A	571	52.70	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
2oa4A	101	53.53		
2dlxA	153	58.80		
1gbsA	185	59.14	d.2.1.5	36986
1x9fB	145	59.89	a.1.1.2	114984
2j01U	118	60.83		
2h8fA	143	60.87	a.1.1.2	136239
1v4xA	144	62.14	a.1.1.2	108363
1u5uA	374	62.77	e.5.1.2	113052
2zfoA	140	62.78		
1n1bA	549	62.85	a.102.4.1,a.128.1.3	79799,79800
1otgA	125	63.05	d.80.1.2	39831
2gdjA	264	65.36	c.37.1.11	135018
1ae7A	119	66.07	a.133.1.2	19553
1zupA	315	67.20	c.55.3.11	125681
1lvk	762	67.33		
1aorA	605	68.59	a.110.1.1,d.152.1.1	19042,41794
1x9fA	151	69.39	a.1.1.2	114983
1jpyA	137	69.44	g.17.1.6	67065
1ithA	141	74.27	a.1.1.2	15623
1gyzA	60	75.37	a.144.2.1	70793
2z99A	219	75.94		
2d2mB	142	77.30		
2fzpA	144	78.92		
3bomA	142	79.38		
1e0gA	48	80.03	d.7.1.1	37325
2ofyA	86	80.68		
2ieaA	886	81.02	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
2pgfA	371	82.56		
1kb9I	55	84.24	f.23.14.1	77324
1h21A	247	84.92	a.138.1.3	76510
1wuiS	267	85.07	e.19.1.1	121290
1gbs	185	85.32		
2ogbA	126	86.19		
1m7sA	484	89.37	e.5.1.1	74574