# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.03645	a.248.1.1	133507
2bkhA	814	4.167		
1y6uA	70	4.318		
1mvwA	840	4.503	i.15.1.1	79523
1w7jA	795	4.579	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	4.770	d.4.1.3,d.285.1.1	107640,107641
1y75B	118	5.443		
2akaA	776	5.571		
1d0yA	761	6.194	b.34.3.1,c.37.1.9	24581,32178
1s69A	124	6.758	a.1.1.1	105305
1dlwA	116	7.491	a.1.1.1	14982
1idrA	136	7.744	a.1.1.1	62301
1r9lA	309	10.45	c.94.1.1	97262
3c8yA	574	11.33		
2d2mA	140	12.70		
1w9iA	770	12.94		
1xb4A	202	14.16	a.4.5.54,a.4.5.54	121832,121833
1ae7A	119	15.26	a.133.1.2	19553
2aa1A	144	16.52	a.1.1.2	126463
2v26A	784	19.53		
1yhuB	144	21.73		
2f6mA	65	24.09	a.2.17.1	133051
2al3A	90	25.49	d.15.1.2	126957
2gwfB	134	27.00		
1lvk	762	29.43		
3b5mA	205	30.23		
1gyzA	60	31.72	a.144.2.1	70793
2ouwA	138	33.38		
1s6lA	212	34.40		
2j01U	118	35.25		
1f0nA	285	38.36	c.69.1.3	34636
1tikA	213	38.47	c.23.5.3	107003
2dlxA	153	40.68		
2h8fA	143	42.22	a.1.1.2	136239
2gdjA	264	44.64	c.37.1.11	135018
2nsvA	52	46.03		
1kb9I	55	46.21	f.23.14.1	77324
2d5rB	116	49.08		
1e39A	571	49.46	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
1n1bA	549	50.12	a.102.4.1,a.128.1.3	79799,79800
3bomA	142	50.23		
1zupA	315	51.52	c.55.3.11	125681
2oa4A	101	52.72		
2amxA	376	54.23	c.1.9.1	127024
2qisA	374	54.50		
1wuiS	267	56.19	e.19.1.1	121290
1bedA	181	56.99	c.47.1.13	90330
2oy9A	98	57.20		
1ubkS	267	59.70	e.19.1.1	88423
2ghjA	118	61.13		
1aorA	605	63.38	a.110.1.1,d.152.1.1	19042,41794
2qnuA	226	63.95		
1jpyA	137	65.41	g.17.1.6	67065
1x9fB	145	66.28	a.1.1.2	114984
2nxoA	291	66.82		
1fohA	664	67.30	c.3.1.2,c.47.1.10,d.16.1.2	30381,33078,37900
1v4xA	144	67.87	a.1.1.2	108363
2z98A	200	69.10		
1sc3B	88	69.55		
2if1A	126	69.62	d.64.1.1	39547
2d2mB	142	69.90		
2fzpA	144	71.48		
1e0gA	48	71.79	d.7.1.1	37325
2fjrA	189	77.14		
1p97A	114	79.06	d.110.3.7	94382
2ag6A	314	80.06		
2pgfA	371	81.74		
1kssA	571	82.71	a.138.1.3,c.3.1.4,d.168.1.1	72928,72929,72930
1kbjA	412	83.04	c.1.4.1	72280
2ofyA	86	83.65		
2ezhA	75	84.26	a.4.1.2	16029
1lm5A	214	84.51	d.211.2.1	74029
2cfmA	561	85.46		
1chuA	540	88.14	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
2cobA	70	88.21	a.4.1.15	130673
1fx7A	230	88.63	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2ogbA	126	89.04		
1ithA	141	89.41	a.1.1.2	15623