# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.004602 a.248.1.1 133507 1u3eM 174 1.676 d.4.1.3,d.285.1.1 107640,107641 1dlwA 116 3.038 a.1.1.1 14982 2akaA 776 3.134 1w7jA 795 3.786 b.34.3.1,c.37.1.9 120688,120689 1d0yA 761 3.985 b.34.3.1,c.37.1.9 24581,32178 2bkhA 814 4.480 1mvwA 840 4.907 i.15.1.1 79523 1y6uA 70 4.946 1qo8A 566 6.624 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1e39A 571 6.642 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1w9iA 770 7.229 1s6lA 212 7.764 1idrA 136 7.773 a.1.1.1 62301 2ouwA 138 9.666 1e0gA 48 9.735 d.7.1.1 37325 1s69A 124 11.03 a.1.1.1 105305 1xb4A 202 11.45 a.4.5.54,a.4.5.54 121832,121833 1lvk 762 14.32 2oy9A 98 14.48 2cobA 70 15.20 a.4.1.15 130673 2v26A 784 16.17 2al3A 90 17.81 d.15.1.2 126957 2j01U 118 18.83 2d2mA 140 18.88 2amxA 376 19.26 c.1.9.1 127024 1kssA 571 19.39 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1wuiS 267 19.90 e.19.1.1 121290 1yhuB 144 21.96 1n1bA 549 24.97 a.102.4.1,a.128.1.3 79799,79800 1z67A 135 26.32 a.259.1.1 124507 2ip2A 334 26.80 2d5rB 116 26.94 1x19A 359 27.08 1ubkS 267 27.76 e.19.1.1 88423 2z99A 219 28.25 1tw3A 360 29.69 a.4.5.29,c.66.1.12 107373,107374 2gdjA 264 29.71 c.37.1.11 135018 1aorA 605 31.12 a.110.1.1,d.152.1.1 19042,41794 1vflA 356 32.47 c.1.9.1 120041 2ghjA 118 32.73 2hp0A 466 34.33 2cfmA 561 34.92 1u55A 188 35.39 d.278.1.1 107677 2pgfA 371 35.68 1bedA 181 36.20 c.47.1.13 90330 2nsaA 170 36.92 2gwfB 134 37.73 1r9lA 309 39.63 c.94.1.1 97262 1khyA 148 40.15 a.174.1.1 77410 2dlxA 153 41.08 3b5mA 205 41.50 2amdA 311 41.60 1x9fB 145 42.51 a.1.1.2 114984 3cjsB 72 43.36 1mp9A 198 44.27 d.129.1.1,d.129.1.1 91385,91386 2fjrA 189 45.25 2jn6A 97 47.18 1fx7A 230 47.91 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1q2wA 308 48.20 b.47.1.4 88355 1k6kA 143 48.27 a.174.1.1 77274 1jkoC 52 51.23 a.4.1.2 66809 2b5aA 77 51.98 a.35.1.3 127882 1szqA 483 52.16 e.44.1.1 99045 2ofyA 86 52.37 2aa1A 144 52.77 a.1.1.2 126463 2h2zA 306 53.39 3c8yA 574 53.98 1a4mA 349 55.32 c.1.9.1 29014 1gbsA 185 55.54 d.2.1.5 36986 2rn7A 108 55.62 3c6fA 153 55.80 3bnyA 320 55.90 1lvaA 258 56.54 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1fohA 664 57.13 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 2gu1A 361 61.63 2cwcA 303 63.20 2zfoA 140 63.39 2z2mA 168 63.61 2h8fA 143 66.27 a.1.1.2 136239 1f0nA 285 66.32 c.69.1.3 34636 1ksiA 642 66.60 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 5eau 548 66.77 2f6mA 65 68.00 a.2.17.1 133051 1wi9A 72 68.69 a.4.5.47 114663 1pv5A 264 69.39 d.251.1.1 95150 1v4xA 144 72.94 a.1.1.2 108363 2hinA 71 73.16 2zc3A 168 73.47 2d2mB 142 73.54 2rcyA 262 74.20 2i1qA 322 74.75 a.60.4.1,c.37.1.11 136984,136985 1qw1A 121 75.67 1e3dA 266 79.48 e.19.1.1 59188 3c24A 286 80.79 1u5uA 374 81.29 e.5.1.2 113052 1sc3B 88 81.39 1rp3A 239 81.85 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2ag6A 314 82.66 2fzpA 144 83.36 2dgdA 223 85.47 3bomA 142 86.16 1ifyA 49 87.52 a.5.2.1 71207 2zfoB 142 87.80