# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3361	a.248.1.1	133507
1idrA	136	7.981	a.1.1.1	62301
1s69A	124	8.163	a.1.1.1	105305
1u3eM	174	12.09	d.4.1.3,d.285.1.1	107640,107641
1dlwA	116	13.04	a.1.1.1	14982
1y6uA	70	16.60		
1w7jA	795	22.69	b.34.3.1,c.37.1.9	120688,120689
1r9lA	309	23.70	c.94.1.1	97262
1d0yA	761	24.99	b.34.3.1,c.37.1.9	24581,32178
2bkhA	814	28.41		
1tikA	213	29.49	c.23.5.3	107003
2f6mA	65	30.64	a.2.17.1	133051
2akaA	776	32.38		
1jpyA	137	33.59	g.17.1.6	67065
1f0nA	285	34.96	c.69.1.3	34636
2aa1A	144	35.40	a.1.1.2	126463
1mvwA	840	37.51	i.15.1.1	79523
2ouwA	138	38.63		
1gbsA	185	40.27	d.2.1.5	36986
1aorA	605	41.28	a.110.1.1,d.152.1.1	19042,41794
3b5mA	205	41.36		
1gbs	185	42.75		
2amxA	376	47.12	c.1.9.1	127024
3c8yA	574	52.02		
1cc8A	73	52.96	d.58.17.1	39343
2oy9A	98	53.23		
2h8fA	143	57.09	a.1.1.2	136239
1otgA	125	57.26	d.80.1.2	39831
1n1bA	549	57.76	a.102.4.1,a.128.1.3	79799,79800
1aocA	175	62.41	g.17.1.5	44817
2yx0A	342	62.43		
1bf6A	291	65.19	c.1.9.3	29065
1x9fA	151	65.87	a.1.1.2	114983
2d2mA	140	66.81		
2ip2A	334	68.92		
1u5uA	374	73.86	e.5.1.2	113052
1vflA	356	73.88	c.1.9.1	120041
1m7sA	484	75.13	e.5.1.1	74574
2qisA	374	78.23		
1qo8A	566	78.39	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
2v26A	784	79.63		
2z99A	219	80.20		
1v4xA	144	80.54	a.1.1.2	108363
1jnuA	104	81.18	d.110.3.6	71762
2ieaA	886	81.31	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
1xb4A	202	81.99	a.4.5.54,a.4.5.54	121832,121833
1e39A	571	84.52	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
3bomA	142	84.87		
1y75B	118	85.01		
2ag6A	314	85.50		
1fx7A	230	85.55	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1vehA	92	86.84	d.52.8.1	113635
1fohA	664	88.31	c.3.1.2,c.47.1.10,d.16.1.2	30381,33078,37900
1gyzA	60	89.00	a.144.2.1	70793
1eca	136	89.40		
1ubkS	267	89.57	e.19.1.1	88423