# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3278	a.248.1.1	133507
1s69A	124	9.146	a.1.1.1	105305
1u3eM	174	10.50	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	12.40	b.34.3.1,c.37.1.9	120688,120689
1idrA	136	12.72	a.1.1.1	62301
1d0yA	761	16.66	b.34.3.1,c.37.1.9	24581,32178
1dlwA	116	17.68	a.1.1.1	14982
2bkhA	814	17.71		
3c8yA	574	17.79		
1y6uA	70	17.94		
1cc8A	73	20.01	d.58.17.1	39343
2akaA	776	20.46		
2aa1A	144	21.36	a.1.1.2	126463
1mvwA	840	23.75	i.15.1.1	79523
1tikA	213	24.83	c.23.5.3	107003
1y75B	118	33.23		
1jpyA	137	36.67	g.17.1.6	67065
2h8fA	143	37.20	a.1.1.2	136239
1r9lA	309	38.76	c.94.1.1	97262
2f6mA	65	42.03	a.2.17.1	133051
1f0nA	285	42.72	c.69.1.3	34636
2ouwA	138	43.63		
1gbsA	185	44.59	d.2.1.5	36986
1xb4A	202	46.64	a.4.5.54,a.4.5.54	121832,121833
1v4xA	144	46.77	a.1.1.2	108363
1aorA	605	47.19	a.110.1.1,d.152.1.1	19042,41794
1gbs	185	48.60		
1u5uA	374	48.97	e.5.1.2	113052
3b5mA	205	49.57		
1vehA	92	51.30	d.52.8.1	113635
1ae7A	119	57.36	a.133.1.2	19553
1otgA	125	57.46	d.80.1.2	39831
1m7sA	484	58.09	e.5.1.1	74574
2oy9A	98	58.35		
3bomA	142	58.88		
1x9fA	151	60.91	a.1.1.2	114983
1jnuA	104	61.42	d.110.3.6	71762
1yhuB	144	62.35		
2v26A	784	62.94		
1w9iA	770	63.67		
1aocA	175	65.74	g.17.1.5	44817
1m85A	484	67.80	e.5.1.1	74578
1bf6A	291	68.50	c.1.9.3	29065
1lvk	762	69.46		
1gyzA	60	73.40	a.144.2.1	70793
2d2mA	140	75.07		
1ithA	141	75.81	a.1.1.2	15623
1ubkS	267	77.46	e.19.1.1	88423
1eca	136	77.66		
2qisA	374	78.06		
1cg5A	141	78.35	a.1.1.2	15406
2amxA	376	78.35	c.1.9.1	127024
1wmuA	141	80.91	a.1.1.2	109416
2dlxA	153	81.68		
1n1bA	549	83.07	a.102.4.1,a.128.1.3	79799,79800
1e3dA	266	83.56	e.19.1.1	59188
2al3A	90	84.87	d.15.1.2	126957
1wuiS	267	85.48	e.19.1.1	121290
2ezhA	75	88.93	a.4.1.2	16029
1e39A	571	89.01	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314