# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3278	a.248.1.1	133507
1s69A	124	10.17	a.1.1.1	105305
1idrA	136	10.50	a.1.1.1	62301
1u3eM	174	11.50	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	13.54	b.34.3.1,c.37.1.9	120688,120689
1dlwA	116	13.64	a.1.1.1	14982
2bkhA	814	16.24		
1d0yA	761	17.23	b.34.3.1,c.37.1.9	24581,32178
1y6uA	70	17.97		
1tikA	213	20.06	c.23.5.3	107003
2akaA	776	20.10		
3c8yA	574	22.70		
1mvwA	840	30.56	i.15.1.1	79523
1r9lA	309	31.53	c.94.1.1	97262
1y75B	118	35.30		
2aa1A	144	35.33	a.1.1.2	126463
1jpyA	137	37.03	g.17.1.6	67065
2f6mA	65	40.00	a.2.17.1	133051
1gbs	185	41.44		
1cc8A	73	42.23	d.58.17.1	39343
1gbsA	185	43.79	d.2.1.5	36986
1f0nA	285	45.45	c.69.1.3	34636
1xb4A	202	45.62	a.4.5.54,a.4.5.54	121832,121833
2ouwA	138	46.36		
3b5mA	205	47.39		
2gwfB	134	50.93		
1u5uA	374	51.31	e.5.1.2	113052
1aorA	605	51.45	a.110.1.1,d.152.1.1	19042,41794
2oy9A	98	51.83		
2h8fA	143	56.63	a.1.1.2	136239
1otgA	125	56.70	d.80.1.2	39831
1w9iA	770	58.99		
2d2mA	140	59.63		
1jnuA	104	62.16	d.110.3.6	71762
1ae7A	119	67.28	a.133.1.2	19553
2amxA	376	69.15	c.1.9.1	127024
2v26A	784	69.72		
1m7sA	484	70.49	e.5.1.1	74574
1yhuB	144	70.54		
1ubkS	267	73.40	e.19.1.1	88423
1lvk	762	75.08		
2al3A	90	75.56	d.15.1.2	126957
1vehA	92	76.18	d.52.8.1	113635
1kb9I	55	78.56	f.23.14.1	77324
1eca	136	79.24		
1wuiS	267	79.65	e.19.1.1	121290
1aocA	175	82.27	g.17.1.5	44817
1n1bA	549	83.14	a.102.4.1,a.128.1.3	79799,79800
1bf6A	291	85.98	c.1.9.3	29065
2qisA	374	86.53		
1e3dA	266	88.83	e.19.1.1	59188
1fx7A	230	88.87	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1x9fA	151	89.63	a.1.1.2	114983