# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.02518	a.248.1.1	133507
1w7jA	795	4.226	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	6.001		
2akaA	776	7.308		
1y6uA	70	10.98		
1d0yA	761	12.94	b.34.3.1,c.37.1.9	24581,32178
1mvwA	840	13.17	i.15.1.1	79523
1u3eM	174	15.24	d.4.1.3,d.285.1.1	107640,107641
1w9iA	770	17.34		
2dlxA	153	17.67		
2j01U	118	18.82		
2qwvA	208	22.40		
2v26A	784	27.06		
2i1qA	322	27.95	a.60.4.1,c.37.1.11	136984,136985
1y75B	118	29.34		
1k6kA	143	38.60	a.174.1.1	77274
1e0gA	48	42.08	d.7.1.1	37325
3c8yA	574	42.47		
1cc8A	73	42.77	d.58.17.1	39343
2d2mA	140	45.26		
1ypyA	184	46.47		
1t5jA	313	48.77	a.209.1.1	99125
1zupA	315	50.07	c.55.3.11	125681
2ofyA	86	52.61		
1etxA	98	54.43	a.4.1.12	18978
2dklA	85	56.51	a.5.2.1	131555
1lvk	762	56.93		
2gdjA	264	61.22	c.37.1.11	135018
1qo8A	566	63.75	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
1e39A	571	66.06	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
1oohA	126	67.34	a.39.2.1	93383
1et0A	269	67.43	e.17.1.1	43289
2d2mC	147	68.94		
1fx7A	230	69.57	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1khyA	148	74.18	a.174.1.1	77410
1gyzA	60	74.77	a.144.2.1	70793
2qnuA	226	80.69		
2nxoA	291	82.83		
2aa1A	144	83.50	a.1.1.2	126463
2gwfB	134	84.35		
2d2mB	142	85.70		
2h8fA	143	89.74	a.1.1.2	136239