# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3871	a.248.1.1	133507
2bkhA	814	8.394		
2akaA	776	10.80		
1u3eM	174	12.85	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	12.93	b.34.3.1,c.37.1.9	120688,120689
1d0yA	761	15.36	b.34.3.1,c.37.1.9	24581,32178
1w9iA	770	23.69		
1s69A	124	24.96	a.1.1.1	105305
2v26A	784	26.33		
1y6uA	70	27.39		
1mvwA	840	29.09	i.15.1.1	79523
3c8yA	574	30.78		
2d2mA	140	34.89		
2f6mA	65	40.48	a.2.17.1	133051
1idrA	136	40.59	a.1.1.1	62301
1r9lA	309	41.73	c.94.1.1	97262
1n1bA	549	42.42	a.102.4.1,a.128.1.3	79799,79800
1y75B	118	42.68		
1lvk	762	45.32		
1dlwA	116	46.22	a.1.1.1	14982
1ae7A	119	46.69	a.133.1.2	19553
1aocA	175	53.36	g.17.1.5	44817
2gdjA	264	54.82	c.37.1.11	135018
1jpyA	137	55.12	g.17.1.6	67065
2al3A	90	55.25	d.15.1.2	126957
1aorA	605	56.44	a.110.1.1,d.152.1.1	19042,41794
1e39A	571	58.01	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
1yhuB	144	60.81		
2ouwA	138	64.43		
2d5rB	116	64.62		
3b5mA	205	65.10		
1z67A	135	67.94	a.259.1.1	124507
2ofyA	86	69.17		
2aa1A	144	76.72	a.1.1.2	126463
2gwfB	134	78.08		
1qo8A	566	83.34	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
1f0nA	285	83.78	c.69.1.3	34636
1vehA	92	89.58	d.52.8.1	113635