# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.01883 a.248.1.1 133507 2pgfA 371 0.3913 2yx0A 342 0.9426 1peqA 714 1.159 a.98.1.1,c.7.1.2 104131,104132 1ae7A 119 1.495 a.133.1.2 19553 1y75B 118 2.469 1u3eM 174 2.687 d.4.1.3,d.285.1.1 107640,107641 1xrsA 516 3.744 c.1.19.4 115883 1eg5A 384 4.134 c.67.1.3 34429 2qezA 455 6.076 1nrfA 262 7.764 e.3.1.1 92086 1s69A 124 9.388 a.1.1.1 105305 2zfoB 142 9.838 1mc2A 122 10.32 a.133.1.2 74622 2qedA 258 10.47 2hbvA 334 10.68 c.1.9.15 136320 1a2aA 122 11.15 a.133.1.2 19540 2rfmA 192 11.31 2zfoA 140 12.17 1zejA 293 12.59 1di1A 300 13.02 a.128.1.4 19446 1idrA 136 13.77 a.1.1.1 62301 2vccA 891 14.55 1xxsA 122 14.95 1dlwA 116 15.42 a.1.1.1 14982 1vqrA 297 15.95 a.211.1.3 114015 1a9xB 379 16.67 c.8.3.1,c.23.16.1 30732,31409 1y6uA 70 17.39 2gdjA 264 17.42 c.37.1.11 135018 1yxhA 126 17.61 2r6fA 972 18.43 1yzxA 226 18.95 2ag6A 314 20.32 1yxlA 119 20.71 a.133.1.2 124191 1m7sA 484 21.49 e.5.1.1 74574 2d2mC 147 21.52 1f0nA 285 21.94 c.69.1.3 34636 2r2iA 198 23.23 2al3A 90 23.86 d.15.1.2 126957 3b5mA 205 24.96 2d5rB 116 25.62 1ej5A 107 26.23 a.68.1.1 18268 2jhnA 295 26.42 1jltB 122 26.98 a.133.1.2 66868 2f6mA 65 27.32 a.2.17.1 133051 2iufA 688 29.52 2v7fA 150 30.77 1nnfA 309 30.78 c.94.1.1 85903 1s8iA 121 30.97 a.133.1.2 98735 1thg 544 30.98 1iwmA 186 31.60 b.125.1.2 83758 2d2mA 140 31.61 1y75A 118 32.80 2qf4A 172 33.04 1cl8A 276 33.96 c.52.1.1 33230 1ypyA 184 34.19 3c8yA 574 34.45 1khyA 148 35.76 a.174.1.1 77410 1fcdA 401 35.92 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1oohA 126 37.49 a.39.2.1 93383 1bif 469 38.64 1vjrA 271 39.03 c.108.1.14 100832 1s6bA 119 39.57 a.133.1.2 98592 1dnpA 471 40.33 a.99.1.1,c.28.1.1 18775,31630 1dgfA 497 40.41 e.5.1.1 42782 2d74B 148 41.26 1s6bB 119 41.39 a.133.1.2 98593 2f8yA 223 42.06 2amdA 311 42.24 2vgeA 229 43.48 2d2mD 145 44.53 2qgpA 112 44.83 1yhuB 144 45.20 1z2zA 446 45.56 1z67A 135 46.66 a.259.1.1 124507 2ouwA 138 48.80 2as0A 396 51.84 b.122.1.9,c.66.1.51 127227,127228 1d0yA 761 51.87 b.34.3.1,c.37.1.9 24581,32178 2aa1A 144 51.87 a.1.1.2 126463 1opr 213 52.04 1mvwA 840 54.33 i.15.1.1 79523 2g5gX 268 54.78 2akaA 776 55.17 1vehA 92 55.63 d.52.8.1 113635 1bedA 181 55.85 c.47.1.13 90330 2oy0A 262 56.06 1oqsB 122 56.58 a.133.1.2 93428 1r1hA 696 56.91 d.92.1.4 104756 1ejbA 168 58.04 c.16.1.1 59417 2ofyA 86 59.47 1etxA 98 60.59 a.4.1.12 18978 1ayfA 105 62.16 d.15.4.1 37684 1ohvA 472 62.31 c.67.1.4 93031 3bblA 287 62.92 3be4A 217 63.47 2h8fA 143 65.38 a.1.1.2 136239 2fyxA 143 65.45 d.58.57.1 134411 2jfkA 433 65.76 2bkhA 814 65.78 1gky 187 66.45 2jabA 136 66.47 2z20A 432 67.94 1ympA 135 69.39 1g4iA 123 70.17 a.133.1.2 60241 2bt6A 108 70.31 d.15.4.1 129152 1w7jA 795 73.31 b.34.3.1,c.37.1.9 120688,120689 1q2wA 308 74.23 b.47.1.4 88355 1zlbA 122 75.42 a.133.1.2 125248 1aokB 122 77.25 a.133.1.2 19561 2amxA 376 77.28 c.1.9.1 127024 1v4xA 144 77.56 a.1.1.2 108363 2qisA 374 77.58 1e0gA 48 78.40 d.7.1.1 37325 1zxmA 400 78.84 2nsvA 52 79.67 3cdlA 203 80.90 2pnwA 380 82.74 1jpyA 137 82.79 g.17.1.6 67065 1p3dA 475 83.46 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1bifA 469 83.84 c.37.1.7,c.60.1.4 31961,34003 1gweA 503 84.16 e.5.1.1 70667 2fdsA 352 84.27 c.1.2.3 133320 1wy9A 147 85.06 2vjqA 428 85.32 3c5rA 137 85.99 2h2zA 306 88.98 2pnqA 467 89.50 1qtsA 247 89.58 b.1.10.1,d.105.1.1 22313,40789