# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2447	a.248.1.1	133507
2bkhA	814	8.637		
1w7jA	795	9.757	b.34.3.1,c.37.1.9	120688,120689
2akaA	776	9.791		
1u3eM	174	10.09	d.4.1.3,d.285.1.1	107640,107641
1d0yA	761	12.92	b.34.3.1,c.37.1.9	24581,32178
1y6uA	70	14.33		
3c8yA	574	18.02		
1s69A	124	20.56	a.1.1.1	105305
1w9iA	770	22.96		
1mvwA	840	23.00	i.15.1.1	79523
1ae7A	119	24.23	a.133.1.2	19553
1y75B	118	24.33		
1r9lA	309	25.84	c.94.1.1	97262
2v26A	784	28.28		
1idrA	136	35.23	a.1.1.1	62301
1n1bA	549	39.55	a.102.4.1,a.128.1.3	79799,79800
1lvk	762	40.96		
1dlwA	116	42.42	a.1.1.1	14982
2d2mA	140	43.38		
2f6mA	65	44.18	a.2.17.1	133051
3b5mA	205	48.97		
2al3A	90	49.17	d.15.1.2	126957
2gdjA	264	50.24	c.37.1.11	135018
1e39A	571	53.59	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
1f0nA	285	60.68	c.69.1.3	34636
1aorA	605	61.44	a.110.1.1,d.152.1.1	19042,41794
1gyzA	60	62.90	a.144.2.1	70793
1aocA	175	65.21	g.17.1.5	44817
1jpyA	137	69.24	g.17.1.6	67065
1kb9I	55	69.80	f.23.14.1	77324
2ouwA	138	73.64		
2gwfB	134	74.39		
1yhuB	144	79.13		
1z67A	135	80.02	a.259.1.1	124507
1vehA	92	84.17	d.52.8.1	113635
2amxA	376	88.52	c.1.9.1	127024