# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.3299	a.248.1.1	133507
1y6uA	70	10.44		
1f0nA	285	11.00	c.69.1.3	34636
1mvwA	840	11.86	i.15.1.1	79523
1w7jA	795	13.53	b.34.3.1,c.37.1.9	120688,120689
1u3eM	174	13.54	d.4.1.3,d.285.1.1	107640,107641
1y75B	118	14.09		
2akaA	776	14.87		
3c8yA	574	16.56		
1d0yA	761	16.68	b.34.3.1,c.37.1.9	24581,32178
1s69A	124	17.31	a.1.1.1	105305
2gwfB	134	19.74		
2bkhA	814	20.11		
2d2mA	140	22.61		
1xb4A	202	23.40	a.4.5.54,a.4.5.54	121832,121833
1ae7A	119	25.30	a.133.1.2	19553
1r9lA	309	26.27	c.94.1.1	97262
1yhuB	144	29.79		
1dlwA	116	31.40	a.1.1.1	14982
1idrA	136	31.91	a.1.1.1	62301
3b5mA	205	32.66		
2aa1A	144	33.34	a.1.1.2	126463
1w9iA	770	35.07		
2f6mA	65	47.25	a.2.17.1	133051
2h8fA	143	50.46	a.1.1.2	136239
2fzpA	144	50.49		
2ouwA	138	50.90		
2ogbA	126	54.15		
1u5uA	374	55.15	e.5.1.2	113052
2al3A	90	61.49	d.15.1.2	126957
1tikA	213	62.18	c.23.5.3	107003
2nsvA	52	63.30		
1vehA	92	66.36	d.52.8.1	113635
1gyzA	60	67.02	a.144.2.1	70793
2dlxA	153	70.89		
3bomA	142	71.12		
1x9fB	145	71.22	a.1.1.2	114984
2nxoA	291	75.19		
1kbjA	412	75.83	c.1.4.1	72280
1jpyA	137	77.38	g.17.1.6	67065
2oy9A	98	77.47		
1aorA	605	78.88	a.110.1.1,d.152.1.1	19042,41794
1kb9I	55	80.02	f.23.14.1	77324
2v26A	784	80.36		
1lvk	762	81.72		
1v4xA	144	82.09	a.1.1.2	108363
1n1bA	549	86.31	a.102.4.1,a.128.1.3	79799,79800
1ithA	141	86.63	a.1.1.2	15623
1smdA	496	88.92	b.71.1.1,c.1.8.1	27768,28755
1ubkS	267	89.11	e.19.1.1	88423
2j01U	118	89.57