# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.07107	a.248.1.1	133507
1w7jA	795	6.073	b.34.3.1,c.37.1.9	120688,120689
1dlwA	116	6.608	a.1.1.1	14982
1u3eM	174	6.893	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	8.227		
1idrA	136	8.800	a.1.1.1	62301
1y6uA	70	9.075		
1s69A	124	9.460	a.1.1.1	105305
2akaA	776	9.859		
2d2mA	140	10.67		
1d0yA	761	11.88	b.34.3.1,c.37.1.9	24581,32178
1f0nA	285	13.03	c.69.1.3	34636
1mvwA	840	13.20	i.15.1.1	79523
2gwfB	134	16.50		
1y75B	118	16.57		
1xb4A	202	18.57	a.4.5.54,a.4.5.54	121832,121833
1yhuB	144	20.96		
3c8yA	574	22.56		
1w9iA	770	22.77		
1r9lA	309	25.03	c.94.1.1	97262
2ouwA	138	27.24		
1ae7A	119	32.09	a.133.1.2	19553
3b5mA	205	34.66		
2v26A	784	35.25		
2aa1A	144	35.94	a.1.1.2	126463
2fzpA	144	36.80		
2ogbA	126	38.41		
2h8fA	143	39.16	a.1.1.2	136239
1aorA	605	42.23	a.110.1.1,d.152.1.1	19042,41794
1x9fB	145	43.23	a.1.1.2	114984
1n1bA	549	43.34	a.102.4.1,a.128.1.3	79799,79800
2oy9A	98	46.96		
1ithA	141	47.68	a.1.1.2	15623
1wuiS	267	49.00	e.19.1.1	121290
2d2mB	142	49.59		
2nsvA	52	50.91		
2f6mA	65	51.00	a.2.17.1	133051
2al3A	90	51.56	d.15.1.2	126957
1lvk	762	51.94		
1vflA	356	53.53	c.1.9.1	120041
1ubkS	267	53.68	e.19.1.1	88423
2nxoA	291	54.20		
2gdjA	264	54.90	c.37.1.11	135018
1e39A	571	55.15	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
1v4xA	144	55.23	a.1.1.2	108363
1aocA	175	55.59	g.17.1.5	44817
1eca	136	55.88		
2j01U	118	57.08		
1e0gA	48	59.81	d.7.1.1	37325
1s6lA	212	60.36		
3bomA	142	62.23		
2zfoA	140	63.43		
1fohA	664	66.26	c.3.1.2,c.47.1.10,d.16.1.2	30381,33078,37900
1kb9I	55	66.83	f.23.14.1	77324
2amxA	376	69.17	c.1.9.1	127024
1jpyA	137	69.49	g.17.1.6	67065
1mp9A	198	71.41	d.129.1.1,d.129.1.1	91385,91386
1zupA	315	77.73	c.55.3.11	125681
2ezhA	75	80.21	a.4.1.2	16029
2dlxA	153	80.67		
1fx7A	230	81.96	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2zfoB	142	84.20		
1ecaA	136	85.09	a.1.1.2	15209
1a4mA	349	87.07	c.1.9.1	29014
1vehA	92	87.72	d.52.8.1	113635