# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1080	a.248.1.1	133507
1u3eM	174	6.754	d.4.1.3,d.285.1.1	107640,107641
1mvwA	840	8.444	i.15.1.1	79523
1y6uA	70	8.562		
1s69A	124	8.953	a.1.1.1	105305
1w7jA	795	9.924	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	9.97		
2akaA	776	11.93		
1dlwA	116	12.16	a.1.1.1	14982
1idrA	136	13.33	a.1.1.1	62301
1d0yA	761	14.11	b.34.3.1,c.37.1.9	24581,32178
2d2mA	140	18.44		
1xb4A	202	21.94	a.4.5.54,a.4.5.54	121832,121833
1y75B	118	22.00		
1f0nA	285	25.09	c.69.1.3	34636
2aa1A	144	26.24	a.1.1.2	126463
1yhuB	144	26.26		
1w9iA	770	27.39		
3b5mA	205	31.56		
3c8yA	574	33.42		
1r9lA	309	33.48	c.94.1.1	97262
1aorA	605	34.85	a.110.1.1,d.152.1.1	19042,41794
2v26A	784	36.83		
2ouwA	138	38.88		
2gwfB	134	42.09		
1s6lA	212	45.26		
1n1bA	549	45.58	a.102.4.1,a.128.1.3	79799,79800
2al3A	90	46.48	d.15.1.2	126957
2j01U	118	49.78		
2oa4A	101	50.00		
1ae7A	119	51.31	a.133.1.2	19553
3bomA	142	52.16		
1jpyA	137	52.34	g.17.1.6	67065
1gyzA	60	55.36	a.144.2.1	70793
2h8fA	143	57.20	a.1.1.2	136239
2f6mA	65	57.75	a.2.17.1	133051
2dlxA	153	60.04		
1v4xA	144	62.60	a.1.1.2	108363
1vehA	92	63.16	d.52.8.1	113635
1e39A	571	65.33	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
2oy9A	98	65.91		
1ubkS	267	66.29	e.19.1.1	88423
1x9fB	145	66.37	a.1.1.2	114984
1wuiS	267	68.12	e.19.1.1	121290
2eqpA	50	69.35		
1lvk	762	71.32		
1e0gA	48	73.75	d.7.1.1	37325
2zfoA	140	75.97		
2amxA	376	79.56	c.1.9.1	127024
2d2mC	147	80.01		
2d2mB	142	80.24		
1tikA	213	80.27	c.23.5.3	107003
1fohA	664	81.87	c.3.1.2,c.47.1.10,d.16.1.2	30381,33078,37900
1otgA	125	82.67	d.80.1.2	39831
2fzpA	144	83.08		
1kb9I	55	84.67	f.23.14.1	77324
2gdjA	264	85.20	c.37.1.11	135018
2nsvA	52	89.64