# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2542	a.248.1.1	133507
1w7jA	795	14.49	b.34.3.1,c.37.1.9	120688,120689
1mvwA	840	15.03	i.15.1.1	79523
2dlxA	153	21.03		
1ypyA	184	21.41		
1u5uA	374	21.47	e.5.1.2	113052
1y6uA	70	21.59		
3c8yA	574	27.13		
1y75B	118	27.17		
1u3eM	174	28.54	d.4.1.3,d.285.1.1	107640,107641
1r9lA	309	29.20	c.94.1.1	97262
1a91	79	34.90		
1f0nA	285	35.38	c.69.1.3	34636
1ae7A	119	36.18	a.133.1.2	19553
2akaA	776	39.34		
2fjrA	189	39.89		
2qebA	145	42.25		
1vflA	356	45.22	c.1.9.1	120041
1smdA	496	45.49	b.71.1.1,c.1.8.1	27768,28755
1aorA	605	48.69	a.110.1.1,d.152.1.1	19042,41794
1d0yA	761	49.80	b.34.3.1,c.37.1.9	24581,32178
1m7sA	484	51.45	e.5.1.1	74574
2z99A	219	55.40		
2gdjA	264	55.99	c.37.1.11	135018
1a4mA	349	56.48	c.1.9.1	29014
2amxA	376	57.64	c.1.9.1	127024
2nxoA	291	58.43		
1t5jA	313	59.83	a.209.1.1	99125
1kbjA	412	61.71	c.1.4.1	72280
1gweA	503	62.15	e.5.1.1	70667
2ib0A	170	63.88		
1m85A	484	65.16	e.5.1.1	74578
1ew0A	130	68.87	d.110.3.2	40905
1zupA	315	70.23	c.55.3.11	125681
2yzvA	303	70.33		
1xj4A	119	71.48	d.110.3.2	122027
1hf2A	210	73.89	b.80.3.1,c.102.1.1	60992,60993
1hbzA	498	74.05	e.5.1.1	60937
2fzpA	144	76.33		
2e4uA	555	77.76		
1lswA	131	77.87	d.110.3.2	78181
1zc0A	309	80.34		
2gwfB	134	81.00		
1wuiS	267	81.09	e.19.1.1	121290
1chuA	540	81.63	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
1udmA	149	82.12	d.109.1.2	107780
1go2A	304	82.23	b.43.4.2,c.25.1.1	76243,76244
2d2mA	140	84.15		
1jpyA	137	85.76	g.17.1.6	67065
1sc3B	88	89.47