# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.000229 a.248.1.1 133507 2ooaA 52 2.497 1qo8A 566 2.706 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2bkhA 814 3.528 1kssA 571 3.906 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2rfmA 192 4.331 2eggA 297 6.139 1jb9A 316 7.214 b.43.4.2,c.25.1.1 62840,62841 1n0qA 93 7.839 k.37.1.1 79754 1p2hA 571 7.947 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2dklA 85 8.896 a.5.2.1 131555 1e39A 571 11.20 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 2f3nA 76 11.41 a.60.1.2 132885 1k6kA 143 12.48 a.174.1.1 77274 1u9lA 70 13.63 a.60.4.2 107751 1t1dA 100 15.87 d.42.1.2 38637 1sctB 151 16.52 a.1.1.2 15003 2b4lA 268 16.69 2in3A 216 18.29 1b0xA 94 18.57 a.60.1.2 17933 2bwbA 46 19.92 a.5.2.1 129329 1zupA 315 20.18 c.55.3.11 125681 1r9lA 309 20.66 c.94.1.1 97262 1etxA 98 21.39 a.4.1.12 18978 1ujcA 161 21.45 1khyA 148 21.51 a.174.1.1 77410 3cswA 285 21.64 1fs7A 485 22.04 a.138.1.3 19691 1b4fA 82 23.08 a.60.1.2 17934 1y6uA 70 23.26 1q9iA 571 23.90 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1jihA 531 25.31 d.240.1.1,e.8.1.7 90374,90375 1e0gA 48 25.33 d.7.1.1 37325 2rc5A 314 25.40 1trkA 680 25.76 c.36.1.10,c.36.1.6,c.48.1.1 31803,31804,33090 1r9jA 673 27.64 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2b5aA 77 28.95 a.35.1.3 127882 2gpcA 194 29.17 2esnA 310 29.23 a.4.5.37,c.94.1.1 132333,132334 2v26A 784 29.41 1v38A 78 30.02 a.60.1.2 100280 2jabA 136 30.37 2vpkA 116 30.65 1pbjA 125 32.16 d.37.1.1,d.37.1.1 94414,94415 2d5cA 263 32.49 1ifyA 49 33.46 a.5.2.1 71207 1wr1B 58 33.55 a.5.2.1 121185 1k20A 310 34.95 c.107.1.1 68027 1vekA 84 35.95 a.5.2.1 113636 2etbA 256 36.22 1yyhA 253 37.99 1fp2A 352 38.81 a.4.5.29,c.66.1.12 59941,59942 2r5nA 669 39.10 1wrvA 308 40.17 3bnjA 485 40.76 1fnc 314 41.35 1a0gA 282 42.47 e.17.1.1 43276 1ogiA 303 43.01 b.43.4.2,c.25.1.1 92914,92915 2j01U 118 43.45 1aipC 196 44.96 a.5.2.2,d.43.1.1 58930,58931 2q81A 119 46.92 1zarA 282 48.12 a.4.5.56,d.144.1.9 124843,124844 1bx1A 314 48.90 b.43.4.2,c.25.1.1 25629,31519 1wzvA 155 50.44 d.20.1.1 121529 2b0oE 301 51.02 2qnuA 226 51.03 1fipA 98 51.12 a.4.1.12 18980 1x2mA 64 51.37 a.4.1.1 121645 2d2mC 147 51.96 2gzxA 265 53.58 1m3kA 392 54.02 c.95.1.1,c.95.1.1 78565,78566 1m4tA 392 54.81 c.95.1.1,c.95.1.1 78617,78618 2e8oA 103 55.51 1ufzA 83 55.63 a.5.9.1 107821 1l1eA 287 56.36 c.66.1.18 73454 1vdlA 80 56.84 a.5.2.1 108528 2pmlX 348 57.03 2pn6A 150 57.75 1vg5A 73 57.97 a.5.2.1 113640 2cw6A 298 58.12 2nxnB 147 58.28 2vkpA 109 58.31 2cg4A 152 58.34 a.4.5.32,d.58.4.2 130417,130418 2nlyA 245 58.37 c.6.2.7 138364 1ccwA 137 58.78 c.23.6.1 31238 2f8yA 223 59.43 2h5xA 196 59.83 2h9dA 101 60.40 a.130.1.1 136250 2d2mB 142 61.18 1u3eM 174 62.80 d.4.1.3,d.285.1.1 107640,107641 1zljA 78 62.87 3daaA 277 63.25 e.17.1.1 43272 2hbg 147 64.36 1d0yA 761 64.93 b.34.3.1,c.37.1.9 24581,32178 2ib8A 395 64.95 2zc2A 78 65.05 1u4gA 301 66.14 d.92.1.2 107670 2hdoA 209 67.04 c.108.1.6 136345 1zv1A 65 68.27 1mvwA 840 68.43 i.15.1.1 79523 2z8aA 146 70.14 2ip2A 334 70.85 1x24A 180 70.95 2obpA 96 72.15 2d2mA 140 72.55 2awpA 198 72.84 2eiyA 308 73.85 1hlvA 131 74.24 a.4.1.7,a.4.1.7 65854,65855 2jgqA 233 74.26 2cw2A 226 74.90 2dbbA 151 76.68 1iyeA 309 77.02 e.17.1.1 83786 2f7tA 227 77.20 2z9wA 392 78.28 1y0pA 571 78.38 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1yzxA 226 79.92 1awcB 153 80.65 d.211.1.1 19156 1r29A 127 80.82 d.42.1.1 96856 2oo9A 46 81.86 2rfaA 232 82.66 2cobA 70 82.74 a.4.1.15 130673 1wi9A 72 84.15 a.4.5.47 114663 1et0A 269 87.41 e.17.1.1 43289 2bepA 159 88.91 d.20.1.1 128385 1tw3A 360 89.01 a.4.5.29,c.66.1.12 107373,107374 1s6lA 212 89.04 2rdzA 452 89.98