This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA M A 2 2 NATAA K A 3 3 NATAA I A 4 4 NATAA T A 5 5 NATAA K A 6 6 NATAA D A 7 7 NATAA M A 8 8 NATAA I A 9 9 NATAA I A 10 10 NATAA A A 11 11 NATAA D A 12 12 NATAA V A 13 13 NATAA L A 14 14 NATAA Q A 15 15 NATAA M A 16 16 NATAA D A 17 17 NATAA R A 18 18 NATAA G A 19 19 NATAA T A 20 20 NATAA A A 21 21 NATRO P A 22 22 NATAA I A 23 23 NATAA F A 24 24 NATAA I A 25 25 NATAA N A 26 26 NATAA N A 27 27 NATAA G A 28 28 NATAA M A 29 29 NATAA H A 30 30 NATRO C A 31 31 NATAA L A 32 32 NATAA G A 33 33 NATRO C A 34 34 NATRO P A 35 35 NATAA S A 36 36 NATAA S A 37 37 NATAA M A 38 38 NATAA G A 39 39 NATAA E A 40 40 NATAA S A 41 41 NATAA I A 42 42 NATAA E A 43 43 NATAA D A 44 44 NATAA A A 45 45 NATRO C A 46 46 NATAA A A 47 47 NATAA V A 48 48 NATAA H A 49 49 NATAA G A 50 50 NATAA I A 51 51 NATAA D A 52 52 NATAA A A 53 53 NATAA D A 54 54 NATAA K A 55 55 NATAA L A 56 56 NATAA V A 57 57 NATAA K A 58 58 NATAA E A 59 59 NATAA L A 60 60 NATAA N A 61 61 NATAA E A 62 62 NATAA Y A 63 63 NATAA F A 64 64 NATAA E A 65 65 NATAA K A 66 66 NATAA K A 67 67 NATAA E A 68 68 NATAA V