PFRMAT RR TARGET T0473 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGI DADKLVKELNEYFEKKEV 4 13 0 8 0.360376 4 15 0 8 0.410079 4 16 0 8 0.376363 4 19 0 8 0.401468 4 20 0 8 0.406502 4 22 0 8 0.466175 4 26 0 8 0.35818 4 30 0 8 0.465117 4 31 0 8 0.465176 4 32 0 8 0.417406 4 33 0 8 0.443274 4 34 0 8 0.401438 4 35 0 8 0.411053 4 36 0 8 0.371757 4 37 0 8 0.355127 4 38 0 8 0.362179 5 15 0 8 0.554106 5 16 0 8 0.500031 5 18 0 8 0.387212 5 19 0 8 0.49048 5 20 0 8 0.539624 5 21 0 8 0.386333 5 22 0 8 0.645791 5 23 0 8 0.466056 5 24 0 8 0.388826 5 26 0 8 0.511565 5 28 0 8 0.391864 5 29 0 8 0.370513 5 30 0 8 0.547728 5 31 0 8 0.527964 5 32 0 8 0.475014 5 33 0 8 0.511595 5 34 0 8 0.456843 5 35 0 8 0.470659 5 36 0 8 0.447937 5 37 0 8 0.428271 5 38 0 8 0.453258 5 39 0 8 0.453793 5 40 0 8 0.388161 5 41 0 8 0.561374 5 43 0 8 0.435717 5 44 0 8 0.519423 5 47 0 8 0.473283 5 48 0 8 0.44195 5 50 0 8 0.364219 5 52 0 8 0.372885 5 55 0 8 0.431151 5 56 0 8 0.378406 5 58 0 8 0.474157 5 59 0 8 0.417612 5 62 0 8 0.54594 5 63 0 8 0.453102 6 19 0 8 0.383187 6 20 0 8 0.363662 6 22 0 8 0.418539 6 30 0 8 0.424747 6 31 0 8 0.4378 6 32 0 8 0.405411 6 33 0 8 0.438461 6 34 0 8 0.396991 6 35 0 8 0.402265 6 36 0 8 0.373807 6 37 0 8 0.355478 6 38 0 8 0.366619 6 39 0 8 0.351784 7 16 0 8 0.367563 7 19 0 8 0.441334 7 20 0 8 0.478035 7 22 0 8 0.581407 7 23 0 8 0.445358 7 30 0 8 0.493344 7 31 0 8 0.46681 7 32 0 8 0.410061 7 33 0 8 0.478604 7 34 0 8 0.411171 7 35 0 8 0.423616 7 36 0 8 0.40213 7 37 0 8 0.375814 7 38 0 8 0.403441 7 39 0 8 0.406786 7 41 0 8 0.504341 7 44 0 8 0.473655 7 55 0 8 0.447636 7 59 0 8 0.380278 7 62 0 8 0.440554 8 19 0 8 0.459876 8 20 0 8 0.461505 8 22 0 8 0.543493 8 23 0 8 0.430022 8 30 0 8 0.505791 8 31 0 8 0.4984 8 32 0 8 0.446356 8 33 0 8 0.508414 8 34 0 8 0.443434 8 35 0 8 0.453844 8 36 0 8 0.429269 8 37 0 8 0.398911 8 38 0 8 0.421044 8 39 0 8 0.41175 8 41 0 8 0.450781 8 44 0 8 0.409213 8 55 0 8 0.390633 8 62 0 8 0.375269 9 18 0 8 0.35137 9 19 0 8 0.646065 9 20 0 8 0.734718 9 21 0 8 0.426955 9 22 0 8 0.827988 9 23 0 8 0.805364 9 24 0 8 0.519306 9 26 0 8 0.568133 9 28 0 8 0.483141 9 29 0 8 0.367079 9 30 0 8 0.725544 9 31 0 8 0.631159 9 32 0 8 0.492704 9 33 0 8 0.648318 9 34 0 8 0.509281 9 35 0 8 0.545326 9 36 0 8 0.542252 9 37 0 8 0.481661 9 38 0 8 0.550454 9 39 0 8 0.582009 9 40 0 8 0.449005 9 41 0 8 0.779565 9 42 0 8 0.353548 9 43 0 8 0.500606 9 44 0 8 0.802653 9 45 0 8 0.603951 9 47 0 8 0.508539 9 48 0 8 0.542196 9 50 0 8 0.438193 9 52 0 8 0.507086 9 54 0 8 0.383083 9 55 0 8 0.793275 9 56 0 8 0.5639 9 58 0 8 0.534105 9 59 0 8 0.748812 9 62 0 8 0.653037 9 63 0 8 0.634411 10 19 0 8 0.582124 10 20 0 8 0.629969 10 21 0 8 0.397372 10 22 0 8 0.743058 10 23 0 8 0.583913 10 24 0 8 0.410846 10 26 0 8 0.545806 10 28 0 8 0.421474 10 30 0 8 0.604235 10 31 0 8 0.542088 10 32 0 8 0.470377 10 33 0 8 0.545287 10 34 0 8 0.460883 10 35 0 8 0.495546 10 36 0 8 0.479715 10 37 0 8 0.446031 10 38 0 8 0.483311 10 39 0 8 0.486215 10 40 0 8 0.386649 10 41 0 8 0.646127 10 43 0 8 0.439949 10 44 0 8 0.612509 10 45 0 8 0.371313 10 47 0 8 0.468214 10 48 0 8 0.484228 10 50 0 8 0.37397 10 52 0 8 0.418074 10 55 0 8 0.555211 10 56 0 8 0.423206 10 58 0 8 0.469013 10 59 0 8 0.510761 10 62 0 8 0.554195 10 63 0 8 0.486341 11 20 0 8 0.413919 11 22 0 8 0.509183 11 23 0 8 0.369179 11 30 0 8 0.431574 11 31 0 8 0.380497 11 33 0 8 0.393843 11 41 0 8 0.418144 11 44 0 8 0.424645 11 59 0 8 0.362446 11 62 0 8 0.423866 12 22 0 8 0.781706 12 23 0 8 0.808652 12 24 0 8 0.467344 12 26 0 8 0.481389 12 28 0 8 0.441426 12 30 0 8 0.675543 12 31 0 8 0.50646 12 33 0 8 0.53191 12 34 0 8 0.36958 12 35 0 8 0.40675 12 36 0 8 0.401166 12 38 0 8 0.417208 12 39 0 8 0.47201 12 41 0 8 0.728105 12 43 0 8 0.401948 12 44 0 8 0.796767 12 45 0 8 0.640857 12 47 0 8 0.435399 12 48 0 8 0.53592 12 50 0 8 0.40426 12 52 0 8 0.473421 12 55 0 8 0.760243 12 56 0 8 0.537084 12 58 0 8 0.484199 12 59 0 8 0.784026 12 62 0 8 0.603821 12 63 0 8 0.635994 13 22 0 8 0.891095 13 23 0 8 0.87162 13 24 0 8 0.70194 13 25 0 8 0.433273 13 26 0 8 0.750126 13 27 0 8 0.412045 13 28 0 8 0.705463 13 29 0 8 0.433894 13 30 0 8 0.820986 13 31 0 8 0.659336 13 32 0 8 0.454064 13 33 0 8 0.666951 13 34 0 8 0.48857 13 35 0 8 0.560281 13 36 0 8 0.558274 13 37 0 8 0.487109 13 38 0 8 0.578558 13 39 0 8 0.631059 13 40 0 8 0.462035 13 41 0 8 0.797771 13 42 0 8 0.406776 13 43 0 8 0.544051 13 44 0 8 0.783593 13 45 0 8 0.646482 13 47 0 8 0.597643 13 48 0 8 0.713671 13 50 0 8 0.584603 13 52 0 8 0.575669 13 55 0 8 0.691735 13 56 0 8 0.561857 13 58 0 8 0.517613 13 59 0 8 0.744638 13 60 0 8 0.361 13 62 0 8 0.629532 13 63 0 8 0.68005 14 23 0 8 0.397992 14 26 0 8 0.471971 14 28 0 8 0.406052 14 30 0 8 0.514154 14 31 0 8 0.421498 14 33 0 8 0.427063 14 34 0 8 0.355266 14 35 0 8 0.388263 14 36 0 8 0.355849 14 38 0 8 0.356124 14 39 0 8 0.356799 14 41 0 8 0.430623 14 44 0 8 0.354895 14 47 0 8 0.365759 14 48 0 8 0.428084 14 62 0 8 0.394332 15 24 0 8 0.422313 15 26 0 8 0.467119 15 28 0 8 0.413307 15 30 0 8 0.575195 15 31 0 8 0.469668 15 32 0 8 0.365848 15 33 0 8 0.479805 15 34 0 8 0.385156 15 35 0 8 0.422069 15 36 0 8 0.407374 15 37 0 8 0.372561 15 38 0 8 0.412345 15 39 0 8 0.448531 15 41 0 8 0.617976 15 43 0 8 0.393587 15 44 0 8 0.531566 15 47 0 8 0.409387 15 48 0 8 0.418975 15 50 0 8 0.360531 15 52 0 8 0.467899 15 55 0 8 0.492527 15 56 0 8 0.402527 15 58 0 8 0.459806 15 59 0 8 0.455759 15 62 0 8 0.535859 15 63 0 8 0.448872 16 26 0 8 0.389345 16 30 0 8 0.502143 16 31 0 8 0.418834 16 33 0 8 0.432063 16 34 0 8 0.353122 16 35 0 8 0.383393 16 36 0 8 0.361027 16 38 0 8 0.365365 16 39 0 8 0.384734 16 41 0 8 0.515534 16 44 0 8 0.432785 16 52 0 8 0.356957 16 55 0 8 0.358219 16 58 0 8 0.369003 16 62 0 8 0.44082 16 63 0 8 0.352519 17 26 0 8 0.370915 17 30 0 8 0.395487 17 33 0 8 0.359166 17 62 0 8 0.35179 19 30 0 8 0.406025 19 31 0 8 0.374227 19 33 0 8 0.391133 20 29 0 8 0.422258 20 30 0 8 0.766921 20 31 0 8 0.669815 20 32 0 8 0.530902 20 33 0 8 0.678029 20 34 0 8 0.537993 20 35 0 8 0.587678 20 36 0 8 0.588551 20 37 0 8 0.534 20 38 0 8 0.598489 20 39 0 8 0.639681 20 40 0 8 0.505751 20 41 0 8 0.807786 20 42 0 8 0.420806 20 43 0 8 0.560757 20 44 0 8 0.755971 20 45 0 8 0.541556 20 47 0 8 0.523589 20 48 0 8 0.529628 20 50 0 8 0.481213 20 52 0 8 0.573184 20 54 0 8 0.433056 20 55 0 8 0.744096 20 56 0 8 0.561897 20 58 0 8 0.554315 20 59 0 8 0.658277 20 60 0 8 0.351813 20 62 0 8 0.65029 20 63 0 8 0.591164 21 30 0 8 0.495783 21 31 0 8 0.458218 21 32 0 8 0.405114 21 33 0 8 0.463502 21 34 0 8 0.395781 21 35 0 8 0.410767 21 36 0 8 0.383256 21 37 0 8 0.354658 21 38 0 8 0.371076 21 39 0 8 0.363089 21 41 0 8 0.396818 22 31 0 8 0.51488 22 32 0 8 0.399302 22 33 0 8 0.52985 22 34 0 8 0.409136 22 35 0 8 0.43643 22 36 0 8 0.427296 22 37 0 8 0.377479 22 38 0 8 0.418806 22 39 0 8 0.450757 22 41 0 8 0.655335 22 43 0 8 0.384761 22 44 0 8 0.667958 22 45 0 8 0.44664 22 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24 62 0 8 0.612826 24 63 0 8 0.573902 25 34 0 8 0.361326 25 35 0 8 0.387773 25 41 0 8 0.395841 25 62 0 8 0.367824 26 35 0 8 0.443174 26 36 0 8 0.422541 26 37 0 8 0.385067 26 38 0 8 0.420397 26 39 0 8 0.445717 26 41 0 8 0.568338 26 43 0 8 0.359685 26 44 0 8 0.445171 26 47 0 8 0.368075 26 48 0 8 0.396478 26 52 0 8 0.448481 26 55 0 8 0.418182 26 58 0 8 0.421746 26 59 0 8 0.359164 26 62 0 8 0.486674 26 63 0 8 0.366793 27 36 0 8 0.446182 27 37 0 8 0.418118 27 38 0 8 0.431824 27 39 0 8 0.421208 27 41 0 8 0.408722 28 37 0 8 0.55554 28 38 0 8 0.590337 28 39 0 8 0.609984 28 40 0 8 0.463764 28 41 0 8 0.776423 28 43 0 8 0.433054 28 44 0 8 0.700321 28 45 0 8 0.470559 28 47 0 8 0.438559 28 48 0 8 0.464993 28 50 0 8 0.411352 28 52 0 8 0.471617 28 55 0 8 0.634942 28 56 0 8 0.424218 28 58 0 8 0.420893 28 59 0 8 0.577423 28 62 0 8 0.535504 28 63 0 8 0.510544 29 38 0 8 0.57871 29 39 0 8 0.566788 29 40 0 8 0.458921 29 41 0 8 0.575161 29 43 0 8 0.351638 29 44 0 8 0.41167 29 47 0 8 0.352668 29 50 0 8 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0 8 0.478227 36 62 0 8 0.550845 36 63 0 8 0.430817 37 47 0 8 0.379433 37 50 0 8 0.352598 37 52 0 8 0.470785 37 54 0 8 0.446327 37 55 0 8 0.600805 37 56 0 8 0.356179 37 58 0 8 0.412009 37 59 0 8 0.411083 37 62 0 8 0.508256 37 63 0 8 0.37323 38 47 0 8 0.370609 38 52 0 8 0.451923 38 54 0 8 0.414137 38 55 0 8 0.609154 38 56 0 8 0.353272 38 58 0 8 0.405182 38 59 0 8 0.431923 38 62 0 8 0.500701 38 63 0 8 0.374853 39 48 0 8 0.453846 39 50 0 8 0.397741 39 52 0 8 0.537431 39 54 0 8 0.457765 39 55 0 8 0.730801 39 56 0 8 0.469361 39 58 0 8 0.504128 39 59 0 8 0.569499 39 62 0 8 0.604666 39 63 0 8 0.491676 40 52 0 8 0.387417 40 55 0 8 0.476418 40 62 0 8 0.409995 41 50 0 8 0.627295 41 51 0 8 0.367852 41 52 0 8 0.764541 41 54 0 8 0.593806 41 55 0 8 0.881651 41 56 0 8 0.721494 41 58 0 8 0.695369 41 59 0 8 0.820861 41 60 0 8 0.458631 41 62 0 8 0.775657 41 63 0 8 0.733843 42 52 0 8 0.606178 42 54 0 8 0.440049 42 55 0 8 0.682887 42 56 0 8 0.50417 42 58 0 8 0.544175 42 59 0 8 0.563104 42 62 0 8 0.619495 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END