PFRMAT RR TARGET T0473 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGI DADKLVKELNEYFEKKEV 4 13 0 8 0.0301102 4 15 0 8 0.0219304 4 16 0 8 0.0436717 4 19 0 8 0.0433328 4 20 0 8 0.046119 4 22 0 8 0.0728214 4 26 0 8 0.0358861 4 30 0 8 0.138083 4 31 0 8 0.105862 4 32 0 8 0.0524465 4 33 0 8 0.0914985 4 34 0 8 0.0420956 4 35 0 8 0.0506421 4 36 0 8 0.0307115 4 37 0 8 0.0359239 4 38 0 8 0.0563274 5 15 0 8 0.0152058 5 16 0 8 0.0341496 5 18 0 8 0.0180744 5 19 0 8 0.0380368 5 20 0 8 0.0375459 5 21 0 8 0.0226428 5 22 0 8 0.0526794 5 23 0 8 0.0826899 5 24 0 8 0.032271 5 26 0 8 0.033618 5 28 0 8 0.0340165 5 29 0 8 0.0544848 5 30 0 8 0.140155 5 31 0 8 0.0747879 5 32 0 8 0.047772 5 33 0 8 0.0841565 5 34 0 8 0.0458756 5 35 0 8 0.0734763 5 36 0 8 0.0355254 5 37 0 8 0.0498529 5 38 0 8 0.0526753 5 39 0 8 0.152563 5 40 0 8 0.0383093 5 41 0 8 0.0583445 5 43 0 8 0.038392 5 44 0 8 0.0486486 5 47 0 8 0.0465347 5 48 0 8 0.094554 5 50 0 8 0.0253387 5 52 0 8 0.0568418 5 55 0 8 0.0758161 5 56 0 8 0.0235475 5 58 0 8 0.0245889 5 59 0 8 0.0307058 5 62 0 8 0.0305859 5 63 0 8 0.0227561 6 19 0 8 0.0320897 6 20 0 8 0.0378154 6 22 0 8 0.0394084 6 30 0 8 0.13769 6 31 0 8 0.0627402 6 32 0 8 0.0651506 6 33 0 8 0.0785438 6 34 0 8 0.0492669 6 35 0 8 0.0343029 6 36 0 8 0.0462065 6 37 0 8 0.0273878 6 38 0 8 0.0282012 6 39 0 8 0.0459216 7 16 0 8 0.0227254 7 19 0 8 0.0317841 7 20 0 8 0.0307249 7 22 0 8 0.0354274 7 23 0 8 0.0499079 7 30 0 8 0.133648 7 31 0 8 0.0506036 7 32 0 8 0.0337367 7 33 0 8 0.0682455 7 34 0 8 0.034167 7 35 0 8 0.0307643 7 36 0 8 0.0281827 7 37 0 8 0.0256248 7 38 0 8 0.024572 7 39 0 8 0.0460624 7 41 0 8 0.0897507 7 44 0 8 0.0402918 7 55 0 8 0.0730838 7 59 0 8 0.0350788 7 62 0 8 0.027602 8 19 0 8 0.031102 8 20 0 8 0.0261728 8 22 0 8 0.0415943 8 23 0 8 0.0481098 8 30 0 8 0.088858 8 31 0 8 0.0400774 8 32 0 8 0.0245608 8 33 0 8 0.0404741 8 34 0 8 0.0244132 8 35 0 8 0.0278086 8 36 0 8 0.0294279 8 37 0 8 0.0238937 8 38 0 8 0.0307886 8 39 0 8 0.0252282 8 41 0 8 0.0471599 8 44 0 8 0.0479297 8 55 0 8 0.0721782 8 62 0 8 0.0273934 9 18 0 8 0.0260369 9 19 0 8 0.0596324 9 20 0 8 0.105899 9 21 0 8 0.0594683 9 22 0 8 0.207046 9 23 0 8 0.218311 9 24 0 8 0.091299 9 26 0 8 0.0690458 9 28 0 8 0.0650583 9 29 0 8 0.0570884 9 30 0 8 0.185988 9 31 0 8 0.14661 9 32 0 8 0.0556843 9 33 0 8 0.134704 9 34 0 8 0.0607538 9 35 0 8 0.0817519 9 36 0 8 0.0505043 9 37 0 8 0.0616197 9 38 0 8 0.0719972 9 39 0 8 0.14505 9 40 0 8 0.0555396 9 41 0 8 0.199426 9 42 0 8 0.0575721 9 43 0 8 0.0466455 9 44 0 8 0.142217 9 45 0 8 0.112781 9 47 0 8 0.0983805 9 48 0 8 0.132206 9 50 0 8 0.0736057 9 52 0 8 0.083782 9 54 0 8 0.0299618 9 55 0 8 0.211197 9 56 0 8 0.0513629 9 58 0 8 0.053443 9 59 0 8 0.144711 9 62 0 8 0.0662376 9 63 0 8 0.0616922 10 19 0 8 0.0373208 10 20 0 8 0.0319134 10 21 0 8 0.0179854 10 22 0 8 0.0422467 10 23 0 8 0.0509415 10 24 0 8 0.0250074 10 26 0 8 0.033389 10 28 0 8 0.0262723 10 30 0 8 0.0930031 10 31 0 8 0.0478495 10 32 0 8 0.0254237 10 33 0 8 0.0398805 10 34 0 8 0.0465807 10 35 0 8 0.0368077 10 36 0 8 0.0361183 10 37 0 8 0.0257637 10 38 0 8 0.0417826 10 39 0 8 0.0486315 10 40 0 8 0.0257689 10 41 0 8 0.0505643 10 43 0 8 0.0180001 10 44 0 8 0.0573202 10 45 0 8 0.0392123 10 47 0 8 0.0346228 10 48 0 8 0.064318 10 50 0 8 0.0241441 10 52 0 8 0.0491845 10 55 0 8 0.0619187 10 56 0 8 0.0265488 10 58 0 8 0.0236413 10 59 0 8 0.0356293 10 62 0 8 0.042585 10 63 0 8 0.0406549 11 20 0 8 0.0156248 11 22 0 8 0.0505147 11 23 0 8 0.0334503 11 30 0 8 0.0575869 11 31 0 8 0.0227446 11 33 0 8 0.0249862 11 41 0 8 0.0298369 11 44 0 8 0.0341361 11 59 0 8 0.0245713 11 62 0 8 0.020545 12 22 0 8 0.137337 12 23 0 8 0.230404 12 24 0 8 0.0521448 12 26 0 8 0.0612082 12 28 0 8 0.0573735 12 30 0 8 0.137372 12 31 0 8 0.104033 12 33 0 8 0.0987121 12 34 0 8 0.039235 12 35 0 8 0.0720109 12 36 0 8 0.038184 12 38 0 8 0.0311712 12 39 0 8 0.0570834 12 41 0 8 0.365792 12 43 0 8 0.0329166 12 44 0 8 0.144196 12 45 0 8 0.0916025 12 47 0 8 0.0420473 12 48 0 8 0.120736 12 50 0 8 0.0563844 12 52 0 8 0.0422365 12 55 0 8 0.132069 12 56 0 8 0.064877 12 58 0 8 0.0316696 12 59 0 8 0.219577 12 62 0 8 0.0527144 12 63 0 8 0.0870647 13 22 0 8 0.243162 13 23 0 8 0.24771 13 24 0 8 0.0793896 13 25 0 8 0.0141152 13 26 0 8 0.0749181 13 27 0 8 0.0903936 13 28 0 8 0.0875545 13 29 0 8 0.0662428 13 30 0 8 0.160673 13 31 0 8 0.174624 13 32 0 8 0.0519093 13 33 0 8 0.111721 13 34 0 8 0.05551 13 35 0 8 0.0779966 13 36 0 8 0.0573718 13 37 0 8 0.0632818 13 38 0 8 0.0895778 13 39 0 8 0.135184 13 40 0 8 0.0478546 13 41 0 8 0.190399 13 42 0 8 0.0490803 13 43 0 8 0.0620285 13 44 0 8 0.197114 13 45 0 8 0.189252 13 47 0 8 0.106886 13 48 0 8 0.137155 13 50 0 8 0.0628903 13 52 0 8 0.0878044 13 55 0 8 0.271408 13 56 0 8 0.0678353 13 58 0 8 0.0632315 13 59 0 8 0.183166 13 60 0 8 0.0841804 13 62 0 8 0.0862166 13 63 0 8 0.112772 14 23 0 8 0.0320161 14 26 0 8 0.0263063 14 28 0 8 0.018617 14 30 0 8 0.0697762 14 31 0 8 0.0378669 14 33 0 8 0.028895 14 34 0 8 0.0266312 14 35 0 8 0.0317769 14 36 0 8 0.0337563 14 38 0 8 0.0212774 14 39 0 8 0.0212038 14 41 0 8 0.0317811 14 44 0 8 0.037501 14 47 0 8 0.0181828 14 48 0 8 0.0531463 14 62 0 8 0.0285195 15 24 0 8 0.0244883 15 26 0 8 0.0260901 15 28 0 8 0.0169665 15 30 0 8 0.0742427 15 31 0 8 0.0470363 15 32 0 8 0.0247935 15 33 0 8 0.0346498 15 34 0 8 0.0310073 15 35 0 8 0.0329811 15 36 0 8 0.0252293 15 37 0 8 0.0279626 15 38 0 8 0.037071 15 39 0 8 0.028993 15 41 0 8 0.03991 15 43 0 8 0.0241089 15 44 0 8 0.0476598 15 47 0 8 0.0296959 15 48 0 8 0.0486731 15 50 0 8 0.0207228 15 52 0 8 0.0348071 15 55 0 8 0.0362254 15 56 0 8 0.0166283 15 58 0 8 0.0232176 15 59 0 8 0.0216769 15 62 0 8 0.0325342 15 63 0 8 0.0248448 16 26 0 8 0.0290435 16 30 0 8 0.0882784 16 31 0 8 0.0707628 16 33 0 8 0.0398264 16 34 0 8 0.0514828 16 35 0 8 0.0472272 16 36 0 8 0.0223135 16 38 0 8 0.050375 16 39 0 8 0.061049 16 41 0 8 0.0485901 16 44 0 8 0.135433 16 52 0 8 0.0623596 16 55 0 8 0.0613056 16 58 0 8 0.0284266 16 62 0 8 0.050603 16 63 0 8 0.0516159 17 26 0 8 0.018901 17 30 0 8 0.147841 17 33 0 8 0.0526187 17 62 0 8 0.0339844 19 30 0 8 0.0878839 19 31 0 8 0.0350888 19 33 0 8 0.0360897 20 29 0 8 0.129949 20 30 0 8 0.194849 20 31 0 8 0.160794 20 32 0 8 0.108686 20 33 0 8 0.133085 20 34 0 8 0.0851555 20 35 0 8 0.0706052 20 36 0 8 0.0661774 20 37 0 8 0.0462932 20 38 0 8 0.0971125 20 39 0 8 0.0907572 20 40 0 8 0.065085 20 41 0 8 0.103463 20 42 0 8 0.0378382 20 43 0 8 0.06794 20 44 0 8 0.150891 20 45 0 8 0.0596065 20 47 0 8 0.0959822 20 48 0 8 0.126262 20 50 0 8 0.089289 20 52 0 8 0.0738652 20 54 0 8 0.0592434 20 55 0 8 0.0888684 20 56 0 8 0.0377833 20 58 0 8 0.0515486 20 59 0 8 0.065801 20 60 0 8 0.0303392 20 62 0 8 0.0880776 20 63 0 8 0.0812074 21 30 0 8 0.0868619 21 31 0 8 0.0757753 21 32 0 8 0.0520847 21 33 0 8 0.0571577 21 34 0 8 0.0401144 21 35 0 8 0.0390446 21 36 0 8 0.0295125 21 37 0 8 0.0322764 21 38 0 8 0.0367999 21 39 0 8 0.047023 21 41 0 8 0.0317546 22 31 0 8 0.0999743 22 32 0 8 0.0443394 22 33 0 8 0.117194 22 34 0 8 0.0479348 22 35 0 8 0.0823802 22 36 0 8 0.0670045 22 37 0 8 0.0429109 22 38 0 8 0.0700358 22 39 0 8 0.0574872 22 41 0 8 0.145351 22 43 0 8 0.0247336 22 44 0 8 0.116622 22 45 0 8 0.0557441 22 47 0 8 0.0788049 22 48 0 8 0.0960847 22 52 0 8 0.0571342 22 55 0 8 0.111173 22 56 0 8 0.0295791 22 58 0 8 0.0484371 22 59 0 8 0.0903592 22 62 0 8 0.0647585 22 63 0 8 0.0422117 23 32 0 8 0.0498659 23 33 0 8 0.147868 23 34 0 8 0.0449725 23 35 0 8 0.0596694 23 36 0 8 0.0495684 23 37 0 8 0.108456 23 38 0 8 0.149575 23 39 0 8 0.105261 23 40 0 8 0.0379786 23 41 0 8 0.406293 23 43 0 8 0.0683691 23 44 0 8 0.118305 23 45 0 8 0.0947232 23 47 0 8 0.0665916 23 48 0 8 0.139751 23 50 0 8 0.0554356 23 52 0 8 0.043366 23 55 0 8 0.196702 23 56 0 8 0.0481623 23 58 0 8 0.0454159 23 59 0 8 0.283614 23 62 0 8 0.0544903 23 63 0 8 0.0619951 24 33 0 8 0.0711262 24 34 0 8 0.0743129 24 35 0 8 0.074751 24 36 0 8 0.0422223 24 37 0 8 0.0544332 24 38 0 8 0.074078 24 39 0 8 0.0970302 24 40 0 8 0.0457913 24 41 0 8 0.134392 24 42 0 8 0.0398987 24 43 0 8 0.0721954 24 44 0 8 0.198874 24 45 0 8 0.137307 24 47 0 8 0.0822784 24 48 0 8 0.104839 24 50 0 8 0.042151 24 52 0 8 0.0740071 24 55 0 8 0.111167 24 56 0 8 0.0486043 24 58 0 8 0.046638 24 59 0 8 0.0817884 24 62 0 8 0.0736611 24 63 0 8 0.0721168 25 34 0 8 0.0185679 25 35 0 8 0.0192745 25 41 0 8 0.0318036 25 62 0 8 0.0308904 26 35 0 8 0.0314879 26 36 0 8 0.0333323 26 37 0 8 0.0281038 26 38 0 8 0.0356801 26 39 0 8 0.0307085 26 41 0 8 0.0409607 26 43 0 8 0.0252838 26 44 0 8 0.0564024 26 47 0 8 0.0280725 26 48 0 8 0.0725874 26 52 0 8 0.042702 26 55 0 8 0.0566535 26 58 0 8 0.0748962 26 59 0 8 0.031784 26 62 0 8 0.0505927 26 63 0 8 0.0372 27 36 0 8 0.0404955 27 37 0 8 0.0285463 27 38 0 8 0.0655091 27 39 0 8 0.117372 27 41 0 8 0.0587443 28 37 0 8 0.0371454 28 38 0 8 0.0500523 28 39 0 8 0.0476591 28 40 0 8 0.0457354 28 41 0 8 0.0906978 28 43 0 8 0.0289843 28 44 0 8 0.102751 28 45 0 8 0.0362458 28 47 0 8 0.024077 28 48 0 8 0.0878445 28 50 0 8 0.0763159 28 52 0 8 0.0799289 28 55 0 8 0.0897414 28 56 0 8 0.0252911 28 58 0 8 0.0263389 28 59 0 8 0.05025 28 62 0 8 0.0474472 28 63 0 8 0.0322428 29 38 0 8 0.043117 29 39 0 8 0.057169 29 40 0 8 0.0236415 29 41 0 8 0.0505599 29 43 0 8 0.0184448 29 44 0 8 0.0544018 29 47 0 8 0.0260475 29 50 0 8 0.0260796 29 52 0 8 0.105847 29 55 0 8 0.113483 29 62 0 8 0.0306614 30 39 0 8 0.144438 30 40 0 8 0.110438 30 41 0 8 0.223347 30 42 0 8 0.0641625 30 43 0 8 0.0418711 30 44 0 8 0.148539 30 45 0 8 0.167518 30 47 0 8 0.0403513 30 48 0 8 0.178256 30 50 0 8 0.0934632 30 51 0 8 0.0547074 30 52 0 8 0.106617 30 54 0 8 0.0503221 30 55 0 8 0.187357 30 56 0 8 0.0537512 30 58 0 8 0.0459612 30 59 0 8 0.119838 30 62 0 8 0.0617197 30 63 0 8 0.0477028 31 40 0 8 0.0740403 31 41 0 8 0.185842 31 42 0 8 0.0376023 31 43 0 8 0.0457462 31 44 0 8 0.0842832 31 45 0 8 0.0525886 31 47 0 8 0.0501934 31 48 0 8 0.108162 31 50 0 8 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0.0133721 46 55 0 8 0.119651 46 56 0 8 0.0509581 46 58 0 8 0.0188556 46 59 0 8 0.0236378 46 62 0 8 0.0210075 46 63 0 8 0.0311183 47 56 0 8 0.0417428 47 58 0 8 0.0236982 47 59 0 8 0.0414381 47 62 0 8 0.06405 47 63 0 8 0.0474587 48 58 0 8 0.0232732 48 59 0 8 0.0441419 48 62 0 8 0.0356605 48 63 0 8 0.0274329 49 58 0 8 0.0111007 49 59 0 8 0.0304902 49 62 0 8 0.0219832 50 59 0 8 0.0297596 50 60 0 8 0.00616005 50 62 0 8 0.0137799 50 63 0 8 0.0200649 51 62 0 8 0.00923008 52 62 0 8 0.053368 52 63 0 8 0.0776458 52 65 0 8 0.014546 53 62 0 8 0.00779937 56 65 0 8 0.0160534 END