PFRMAT RR TARGET T0473 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGI DADKLVKELNEYFEKKEV 3 12 0 8 0.763015 3 13 0 8 0.603956 3 15 0 8 0.526113 3 16 0 8 0.568454 3 19 0 8 0.566467 3 20 0 8 0.582463 3 22 0 8 0.712658 3 23 0 8 0.776018 3 24 0 8 0.523655 3 26 0 8 0.590424 3 27 0 8 0.430753 3 28 0 8 0.52945 3 29 0 8 0.453476 3 30 0 8 0.738874 3 31 0 8 0.555197 3 32 0 8 0.447978 3 33 0 8 0.650899 3 34 0 8 0.446078 3 35 0 8 0.443366 3 36 0 8 0.478365 3 38 0 8 0.469169 3 39 0 8 0.655494 3 41 0 8 0.668793 3 44 0 8 0.652395 3 45 0 8 0.555762 3 47 0 8 0.467025 3 48 0 8 0.619598 3 50 0 8 0.484912 3 52 0 8 0.517303 3 55 0 8 0.765045 3 56 0 8 0.488101 3 58 0 8 0.46638 3 59 0 8 0.728336 3 60 0 8 0.475748 3 62 0 8 0.567893 3 63 0 8 0.521925 4 15 0 8 0.457794 4 16 0 8 0.624068 4 19 0 8 0.421578 4 20 0 8 0.464992 4 22 0 8 0.511386 4 23 0 8 0.498527 4 27 0 8 0.463646 4 29 0 8 0.485279 4 30 0 8 0.553687 4 31 0 8 0.587231 4 32 0 8 0.478043 4 33 0 8 0.516188 4 35 0 8 0.428014 4 37 0 8 0.453779 4 38 0 8 0.465276 4 39 0 8 0.612694 4 41 0 8 0.44453 4 52 0 8 0.456773 4 55 0 8 0.499786 5 15 0 8 0.52734 5 16 0 8 0.692072 5 18 0 8 0.43168 5 22 0 8 0.612265 5 23 0 8 0.676676 5 24 0 8 0.439435 5 26 0 8 0.531454 5 27 0 8 0.494132 5 28 0 8 0.422725 5 29 0 8 0.581686 5 30 0 8 0.612828 5 31 0 8 0.583354 5 32 0 8 0.48712 5 33 0 8 0.591361 5 34 0 8 0.502895 5 35 0 8 0.604595 5 36 0 8 0.482466 5 37 0 8 0.601404 5 38 0 8 0.518978 5 39 0 8 0.683527 5 41 0 8 0.54651 5 42 0 8 0.522732 5 43 0 8 0.475797 5 44 0 8 0.493654 5 47 0 8 0.574914 5 48 0 8 0.524933 5 52 0 8 0.539345 5 55 0 8 0.644149 5 59 0 8 0.488686 5 60 0 8 0.542645 5 63 0 8 0.460602 6 16 0 8 0.432633 6 20 0 8 0.424664 6 22 0 8 0.500114 6 23 0 8 0.505033 6 30 0 8 0.589655 6 31 0 8 0.481925 6 32 0 8 0.46362 6 33 0 8 0.563917 6 34 0 8 0.436633 6 36 0 8 0.443648 6 41 0 8 0.446497 6 44 0 8 0.424201 7 16 0 8 0.504813 7 20 0 8 0.490987 7 22 0 8 0.579959 7 23 0 8 0.61256 7 26 0 8 0.492436 7 30 0 8 0.638524 7 31 0 8 0.504726 7 32 0 8 0.434156 7 33 0 8 0.578204 7 39 0 8 0.534159 7 41 0 8 0.602958 7 44 0 8 0.493662 7 48 0 8 0.439571 7 52 0 8 0.474176 7 55 0 8 0.584156 7 56 0 8 0.485893 7 59 0 8 0.475147 7 60 0 8 0.527261 7 62 0 8 0.477398 8 22 0 8 0.549493 8 23 0 8 0.550261 8 26 0 8 0.4411 8 30 0 8 0.522435 8 31 0 8 0.442143 8 33 0 8 0.461214 8 37 0 8 0.443636 8 38 0 8 0.512625 8 41 0 8 0.454088 8 44 0 8 0.437835 8 55 0 8 0.539092 9 19 0 8 0.57404 9 20 0 8 0.659073 9 21 0 8 0.56026 9 22 0 8 0.821171 9 23 0 8 0.835009 9 24 0 8 0.651883 9 26 0 8 0.562572 9 27 0 8 0.607733 9 28 0 8 0.531561 9 29 0 8 0.501767 9 30 0 8 0.773702 9 31 0 8 0.659587 9 32 0 8 0.5328 9 33 0 8 0.709601 9 34 0 8 0.541201 9 35 0 8 0.567775 9 36 0 8 0.55884 9 37 0 8 0.562968 9 38 0 8 0.579768 9 39 0 8 0.75137 9 40 0 8 0.524904 9 41 0 8 0.724793 9 42 0 8 0.549015 9 43 0 8 0.556497 9 44 0 8 0.766783 9 45 0 8 0.708893 9 47 0 8 0.655474 9 48 0 8 0.663023 9 50 0 8 0.444596 9 52 0 8 0.571094 9 54 0 8 0.444998 9 55 0 8 0.772605 9 56 0 8 0.579319 9 58 0 8 0.555987 9 59 0 8 0.717342 9 60 0 8 0.632443 9 62 0 8 0.554874 9 63 0 8 0.533245 10 19 0 8 0.590499 10 20 0 8 0.650812 10 22 0 8 0.677592 10 23 0 8 0.682874 10 24 0 8 0.660906 10 26 0 8 0.58855 10 27 0 8 0.49229 10 28 0 8 0.475306 10 30 0 8 0.612241 10 31 0 8 0.600169 10 33 0 8 0.532924 10 34 0 8 0.692608 10 35 0 8 0.546235 10 36 0 8 0.475126 10 37 0 8 0.581029 10 38 0 8 0.593478 10 39 0 8 0.560044 10 40 0 8 0.544203 10 41 0 8 0.562203 10 42 0 8 0.430988 10 43 0 8 0.512047 10 44 0 8 0.545943 10 46 0 8 0.432999 10 47 0 8 0.525879 10 48 0 8 0.444623 10 52 0 8 0.543337 10 54 0 8 0.510119 10 55 0 8 0.588987 10 58 0 8 0.434014 10 59 0 8 0.464893 10 62 0 8 0.518892 10 63 0 8 0.438989 11 22 0 8 0.623799 11 23 0 8 0.549934 11 30 0 8 0.4991 11 41 0 8 0.447065 11 44 0 8 0.426264 11 55 0 8 0.500224 11 59 0 8 0.429732 12 22 0 8 0.713057 12 23 0 8 0.824339 12 24 0 8 0.529391 12 26 0 8 0.520338 12 27 0 8 0.423091 12 28 0 8 0.517962 12 29 0 8 0.444854 12 30 0 8 0.70231 12 31 0 8 0.569667 12 32 0 8 0.426242 12 33 0 8 0.601073 12 35 0 8 0.473298 12 39 0 8 0.597149 12 40 0 8 0.521847 12 41 0 8 0.799803 12 42 0 8 0.484452 12 43 0 8 0.471038 12 44 0 8 0.737048 12 45 0 8 0.673438 12 47 0 8 0.437501 12 48 0 8 0.627087 12 52 0 8 0.433505 12 54 0 8 0.435549 12 55 0 8 0.712648 12 56 0 8 0.60917 12 59 0 8 0.771725 12 60 0 8 0.516498 12 62 0 8 0.556285 12 63 0 8 0.626001 13 22 0 8 0.886745 13 23 0 8 0.872931 13 24 0 8 0.646354 13 26 0 8 0.690596 13 27 0 8 0.619516 13 28 0 8 0.720128 13 29 0 8 0.552428 13 30 0 8 0.764113 13 31 0 8 0.755309 13 32 0 8 0.464248 13 33 0 8 0.660587 13 34 0 8 0.486966 13 35 0 8 0.543502 13 36 0 8 0.541775 13 37 0 8 0.558211 13 38 0 8 0.616402 13 39 0 8 0.752656 13 40 0 8 0.470193 13 41 0 8 0.733033 13 42 0 8 0.488143 13 43 0 8 0.558462 13 44 0 8 0.80621 13 45 0 8 0.748808 13 47 0 8 0.711681 13 48 0 8 0.69164 13 50 0 8 0.459384 13 52 0 8 0.616146 13 54 0 8 0.42756 13 55 0 8 0.810549 13 56 0 8 0.579575 13 58 0 8 0.541465 13 59 0 8 0.741597 13 60 0 8 0.559857 13 62 0 8 0.62851 13 63 0 8 0.687937 14 26 0 8 0.60655 14 30 0 8 0.459202 15 24 0 8 0.589234 15 26 0 8 0.634045 15 29 0 8 0.541599 15 30 0 8 0.5058 15 31 0 8 0.489792 15 37 0 8 0.590641 15 38 0 8 0.606182 15 39 0 8 0.42096 15 41 0 8 0.524192 15 43 0 8 0.61156 15 44 0 8 0.574057 15 45 0 8 0.49517 15 47 0 8 0.56457 15 50 0 8 0.467719 15 52 0 8 0.457941 15 55 0 8 0.509669 15 56 0 8 0.445248 15 58 0 8 0.550873 15 59 0 8 0.47289 15 62 0 8 0.599137 15 63 0 8 0.539313 16 26 0 8 0.544388 16 29 0 8 0.619711 16 30 0 8 0.46549 16 31 0 8 0.548661 16 37 0 8 0.465479 16 38 0 8 0.434788 16 39 0 8 0.509074 16 41 0 8 0.472739 16 44 0 8 0.687177 16 45 0 8 0.499969 16 47 0 8 0.534952 16 48 0 8 0.465951 16 52 0 8 0.539601 16 55 0 8 0.501265 16 58 0 8 0.435136 16 60 0 8 0.440163 16 62 0 8 0.59312 16 63 0 8 0.661919 17 26 0 8 0.523784 17 30 0 8 0.550666 17 33 0 8 0.483405 18 62 0 8 0.470209 19 30 0 8 0.477305 19 38 0 8 0.444148 19 41 0 8 0.529317 19 55 0 8 0.433034 19 58 0 8 0.475431 19 62 0 8 0.469194 20 29 0 8 0.529739 20 30 0 8 0.710306 20 31 0 8 0.684027 20 32 0 8 0.665243 20 33 0 8 0.617833 20 34 0 8 0.586608 20 35 0 8 0.48767 20 36 0 8 0.593792 20 37 0 8 0.590667 20 38 0 8 0.688374 20 39 0 8 0.580673 20 40 0 8 0.520114 20 41 0 8 0.600113 20 43 0 8 0.697269 20 44 0 8 0.811545 20 45 0 8 0.480921 20 47 0 8 0.671506 20 48 0 8 0.564406 20 52 0 8 0.482664 20 54 0 8 0.529272 20 55 0 8 0.585241 20 56 0 8 0.442574 20 58 0 8 0.446667 20 59 0 8 0.516943 20 62 0 8 0.578087 20 63 0 8 0.534161 21 30 0 8 0.478896 21 31 0 8 0.48527 21 37 0 8 0.456073 22 31 0 8 0.552952 22 32 0 8 0.449455 22 33 0 8 0.651696 22 34 0 8 0.461428 22 35 0 8 0.61007 22 36 0 8 0.506984 22 37 0 8 0.438495 22 38 0 8 0.550451 22 39 0 8 0.546186 22 41 0 8 0.644862 22 43 0 8 0.442472 22 44 0 8 0.681287 22 45 0 8 0.575467 22 47 0 8 0.56281 22 48 0 8 0.497659 22 50 0 8 0.424245 22 52 0 8 0.486549 22 55 0 8 0.698945 22 56 0 8 0.459646 22 58 0 8 0.500899 22 59 0 8 0.678569 22 62 0 8 0.609002 22 63 0 8 0.519987 23 32 0 8 0.5958 23 33 0 8 0.785336 23 34 0 8 0.563924 23 35 0 8 0.587911 23 36 0 8 0.598955 23 37 0 8 0.639931 23 38 0 8 0.695334 23 39 0 8 0.735395 23 40 0 8 0.507222 23 41 0 8 0.85738 23 42 0 8 0.548149 23 43 0 8 0.651208 23 44 0 8 0.75155 23 45 0 8 0.711698 23 47 0 8 0.529273 23 48 0 8 0.673679 23 49 0 8 0.424039 23 50 0 8 0.459579 23 52 0 8 0.494119 23 54 0 8 0.48721 23 55 0 8 0.786321 23 56 0 8 0.603718 23 58 0 8 0.509319 23 59 0 8 0.876159 23 60 0 8 0.491078 23 62 0 8 0.552678 23 63 0 8 0.593361 24 33 0 8 0.613322 24 34 0 8 0.736065 24 35 0 8 0.618218 24 36 0 8 0.506348 24 37 0 8 0.789941 24 38 0 8 0.695984 24 39 0 8 0.663697 24 40 0 8 0.478437 24 41 0 8 0.708311 24 43 0 8 0.734041 24 44 0 8 0.804155 24 45 0 8 0.686573 24 46 0 8 0.43455 24 47 0 8 0.750591 24 48 0 8 0.621584 24 50 0 8 0.447812 24 52 0 8 0.677045 24 55 0 8 0.685363 24 56 0 8 0.47389 24 58 0 8 0.488607 24 59 0 8 0.617909 24 60 0 8 0.508416 24 62 0 8 0.614457 24 63 0 8 0.616403 25 58 0 8 0.440579 26 37 0 8 0.441984 26 38 0 8 0.425377 26 41 0 8 0.474663 26 44 0 8 0.541006 26 48 0 8 0.437501 26 50 0 8 0.421317 26 52 0 8 0.502347 26 55 0 8 0.542875 26 58 0 8 0.614958 26 59 0 8 0.466943 26 62 0 8 0.585376 26 63 0 8 0.503681 27 38 0 8 0.433177 27 39 0 8 0.57535 27 41 0 8 0.503263 27 44 0 8 0.492532 27 55 0 8 0.618222 27 59 0 8 0.45303 27 62 0 8 0.423122 28 37 0 8 0.602301 28 38 0 8 0.599862 28 39 0 8 0.655723 28 40 0 8 0.578289 28 41 0 8 0.675856 28 43 0 8 0.584654 28 44 0 8 0.759377 28 45 0 8 0.511352 28 48 0 8 0.561947 28 49 0 8 0.443933 28 50 0 8 0.529801 28 52 0 8 0.554113 28 54 0 8 0.437581 28 55 0 8 0.669994 28 56 0 8 0.44363 28 58 0 8 0.432742 28 59 0 8 0.657308 28 62 0 8 0.53448 28 63 0 8 0.446676 29 38 0 8 0.634184 29 39 0 8 0.647517 29 40 0 8 0.433549 29 41 0 8 0.565245 29 44 0 8 0.574216 29 47 0 8 0.540758 29 48 0 8 0.427218 29 49 0 8 0.43113 29 52 0 8 0.586687 29 55 0 8 0.653859 29 62 0 8 0.508602 29 63 0 8 0.491685 30 39 0 8 0.811106 30 40 0 8 0.664673 30 41 0 8 0.813807 30 42 0 8 0.499102 30 43 0 8 0.501843 30 44 0 8 0.808448 30 45 0 8 0.69417 30 47 0 8 0.444115 30 48 0 8 0.756561 30 49 0 8 0.459997 30 50 0 8 0.511729 30 51 0 8 0.560539 30 52 0 8 0.584851 30 54 0 8 0.454835 30 55 0 8 0.833877 30 56 0 8 0.577671 30 58 0 8 0.501605 30 59 0 8 0.850884 30 60 0 8 0.455423 30 62 0 8 0.568213 30 63 0 8 0.537416 31 40 0 8 0.717504 31 41 0 8 0.763906 31 42 0 8 0.446864 31 43 0 8 0.584885 31 44 0 8 0.689213 31 45 0 8 0.516629 31 47 0 8 0.568519 31 48 0 8 0.544191 31 49 0 8 0.465865 31 50 0 8 0.500743 31 51 0 8 0.442256 31 52 0 8 0.666179 31 54 0 8 0.511564 31 55 0 8 0.758247 31 56 0 8 0.616284 31 58 0 8 0.517057 31 59 0 8 0.618242 31 62 0 8 0.64369 31 63 0 8 0.541451 32 41 0 8 0.671238 32 43 0 8 0.59718 32 44 0 8 0.666445 32 48 0 8 0.456652 32 49 0 8 0.453623 32 52 0 8 0.471628 32 55 0 8 0.638339 32 59 0 8 0.527251 32 62 0 8 0.485613 33 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36 62 0 8 0.496027 37 47 0 8 0.579194 37 48 0 8 0.492092 37 49 0 8 0.444744 37 50 0 8 0.48584 37 52 0 8 0.674238 37 54 0 8 0.503658 37 55 0 8 0.659828 37 58 0 8 0.576797 37 59 0 8 0.435764 37 62 0 8 0.543235 37 63 0 8 0.488885 38 47 0 8 0.729793 38 48 0 8 0.462402 38 52 0 8 0.557097 38 54 0 8 0.550426 38 55 0 8 0.694719 38 56 0 8 0.467167 38 58 0 8 0.620184 38 59 0 8 0.542782 38 62 0 8 0.605511 38 63 0 8 0.486093 39 48 0 8 0.67846 39 49 0 8 0.455706 39 51 0 8 0.421197 39 52 0 8 0.628904 39 54 0 8 0.457436 39 55 0 8 0.839086 39 56 0 8 0.511892 39 58 0 8 0.455083 39 59 0 8 0.646223 39 60 0 8 0.652632 39 62 0 8 0.55387 40 55 0 8 0.606168 40 59 0 8 0.493744 41 50 0 8 0.488026 41 51 0 8 0.444621 41 52 0 8 0.655625 41 54 0 8 0.559866 41 55 0 8 0.859601 41 56 0 8 0.666618 41 59 0 8 0.874336 41 60 0 8 0.618548 41 62 0 8 0.656411 41 63 0 8 0.613737 42 52 0 8 0.611159 42 54 0 8 0.524405 42 55 0 8 0.748904 42 56 0 8 0.504478 42 59 0 8 0.563188 42 60 0 8 0.442568 42 62 0 8 0.50599 42 63 0 8 0.424967 43 52 0 8 0.49976 43 55 0 8 0.584906 43 59 0 8 0.479681 43 62 0 8 0.468536 44 54 0 8 0.592464 44 55 0 8 0.825348 44 56 0 8 0.628836 44 58 0 8 0.657358 44 59 0 8 0.860962 44 60 0 8 0.593937 44 62 0 8 0.649035 44 63 0 8 0.708229 45 54 0 8 0.628359 45 55 0 8 0.951445 45 56 0 8 0.710492 45 58 0 8 0.70385 45 59 0 8 0.893637 45 60 0 8 0.583016 45 62 0 8 0.766521 45 63 0 8 0.83092 46 55 0 8 0.625931 46 56 0 8 0.442699 46 58 0 8 0.542922 46 59 0 8 0.551506 46 62 0 8 0.564603 46 63 0 8 0.514624 47 56 0 8 0.460243 47 58 0 8 0.575491 47 59 0 8 0.635963 47 60 0 8 0.575153 47 62 0 8 0.720286 47 63 0 8 0.559894 47 66 0 8 0.521287 48 58 0 8 0.484085 48 59 0 8 0.783355 48 60 0 8 0.51888 48 62 0 8 0.533914 48 63 0 8 0.512289 49 58 0 8 0.46353 49 59 0 8 0.598274 49 60 0 8 0.446504 49 62 0 8 0.513488 50 59 0 8 0.672728 50 62 0 8 0.580438 50 63 0 8 0.545234 52 61 0 8 0.525504 52 62 0 8 0.83994 52 63 0 8 0.766537 52 66 0 8 0.463439 56 65 0 8 0.466717 56 66 0 8 0.546324 END