# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.12e-07		
1zn6A	227	47.18	d.303.1.1	125373
1txdA	385	47.98	a.87.1.1,b.55.1.1	107422,107423
2gz6A	388	52.80		
2f20A	240	57.83	d.303.1.1	132791
2yrlA	102	59.02		
2hi4A	495	60.35		
2e55A	208	63.03		
1jpzA	473	65.00	a.104.1.1	67069
1tqzA	133	65.58	b.55.1.11	119327
2icuA	229	72.72		
1fp3A	402	73.52	a.102.1.3	18842
2il5A	171	84.06		
2zblA	421	87.36		
1pjjA	271	89.63	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166