# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.40e-07		
2f20A	240	18.87	d.303.1.1	132791
1zn6A	227	26.97	d.303.1.1	125373
1tqzA	133	28.17	b.55.1.11	119327
1yf5L	254	46.13	c.55.1.11,c.55.1.11	123049,123050
2gz6A	388	52.70		
2rp4A	76	52.74		
2icuA	229	52.85		
1gln	468	55.37		
2e55A	208	58.99		
1mi3A	322	64.01	c.1.7.1	91274
2p0lA	288	65.25		
2il5A	171	73.96		
1yn8A	59	78.38		
1g59A	468	83.38	a.97.1.1,c.26.1.1	60257,60258
2zblA	421	86.39		
2yrlA	102	87.89		
1irsA	112	88.33	b.55.1.2	26991
1jpzA	473	88.75	a.104.1.1	67069