# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.16e-09		
1tqzA	133	8.006	b.55.1.11	119327
2il5A	171	8.097		
2f20A	240	10.65	d.303.1.1	132791
2e55A	208	13.60		
1zn6A	227	17.30	d.303.1.1	125373
2icuA	229	29.65		
1t92A	116	31.29	d.24.1.3	112326
5gcnA	166	31.46	d.108.1.1	40807
1pzxA	289	37.26	c.119.1.1	95484
1z6eB	52	40.58	g.3.11.1	124519
2gz6A	388	40.59		
1jpzA	473	41.47	a.104.1.1	67069
2p3uA	52	47.04		
1wr3A	36	55.89		
1izoA	417	58.32	a.104.1.1	83851
1utaA	81	63.97	d.58.52.1	108029
2a08A	60	67.04		
2b9kA	47	75.80		
2qvpA	275	77.07		
2ciaA	102	79.01		
2rghA	571	80.22		
1yf5L	254	84.23	c.55.1.11,c.55.1.11	123049,123050
1wmvA	54	85.06		
2pr3B	51	85.14		
1vpvA	300	85.63	c.119.1.1	113975
1m93C	41	86.41