# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	6.96e-10		
2rp4A	76	17.17		
2f20A	240	17.39	d.303.1.1	132791
1yprA	125	18.41	d.110.1.1	40888
1zn6A	227	26.41	d.303.1.1	125373
1tqzA	133	31.97	b.55.1.11	119327
1fp3A	402	35.66	a.102.1.3	18842
2e55A	208	40.44		
2gz6A	388	44.65		
1iwmA	186	44.68	b.125.1.2	83758
1t92A	116	48.64	d.24.1.3	112326
1wr3A	36	54.80		
2zblA	421	60.17		
1pjjA	271	61.46	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1r2zA	274	62.88	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1jpzA	473	63.15	a.104.1.1	67069
3bdqA	110	63.83		
1tdzA	272	64.73	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1l1zA	274	70.53	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1k3xA	262	70.64	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2qztA	111	71.03		
1yf5L	254	71.96	c.55.1.11,c.55.1.11	123049,123050
2icuA	229	74.38		
1pzxA	289	76.06	c.119.1.1	95484
2hi4A	495	78.11		
2rghA	571	84.01		
2e74D	179	86.89	b.33.1.1,f.23.12.1	132049,132050
1h5zA	455	89.06	a.104.1.1	90622