# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 3.12e-11 1pjjA 271 4.633 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1itvA 195 4.745 b.66.1.1 76791 2gj2A 85 4.885 1q35A 320 5.993 c.94.1.1 95661 2iucA 375 6.870 2rghA 571 7.010 1t3bA 211 7.805 c.47.1.9,d.17.3.1 106341,106342 2cfuA 658 8.028 1schA 294 8.863 a.93.1.1 18685 1znbA 232 10.51 d.157.1.1 42039 1v9tA 166 11.94 b.62.1.1 108451 1celA 434 11.95 b.29.1.10 24280 1ksiA 642 13.28 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2a2nA 176 13.71 b.62.1.1 126041 2zblA 421 13.73 1t92A 116 13.79 d.24.1.3 112326 1who 96 14.22 1kjqA 391 14.65 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1j1tA 233 15.27 b.29.1.18 90771 1xvlA 321 15.32 c.92.2.2 122380 1zdsA 336 17.30 b.6.1.3,b.6.1.3 124952,124953 1z9tA 255 19.03 2qz7A 194 22.96 1zn6A 227 23.02 d.303.1.1 125373 1nd4A 264 23.80 d.144.1.6 91815 2cf8H 257 24.97 1yvkA 163 25.15 d.108.1.1 124101 1jbwA 428 27.35 c.59.1.2,c.72.2.2 62860,62861 1yf3A 259 28.59 c.66.1.28 123046 2b30A 301 28.79 c.108.1.10 127759 1gz8A 299 29.09 d.144.1.7 83405 1zkcA 197 30.95 b.62.1.1 125182 1eut 605 34.02 1n0uA 842 34.62 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 2pgbB 259 35.39 1hvyA 288 35.88 d.117.1.1 41049 1ro5A 201 36.86 d.108.1.3 105023 2nq5A 755 37.08 1a7aA 432 40.79 c.2.1.4,c.23.12.3 30104,31364 2bhvA 246 43.89 1olzA 663 44.67 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1tdzA 272 44.90 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2bvrH 252 46.25 2tpt 440 49.39 1muhA 481 50.03 c.55.3.4 79485 1ksiB 642 50.09 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 2fiaA 162 50.82 d.108.1.1 133514 2il5A 171 51.56 1zgdA 312 52.81 2aamA 309 53.45 c.1.8.15 126489 2fbeA 201 53.77 b.29.1.22 133241 1smlA 269 54.20 d.157.1.1 42053 2reeA 224 54.35 2pidA 356 54.88 1ykdA 398 55.11 1h4pA 408 55.69 c.1.8.3 90617 1heiA 451 56.37 c.37.1.14,c.37.1.14 32463,32464 2cftA 298 56.73 1gppA 237 59.92 b.86.1.2 76262 2vccA 891 60.95 1gkrA 458 61.34 b.92.1.3,c.1.9.6 70251,70252 1bu7A 455 61.52 a.104.1.1 18937 1gxyA 226 61.87 d.166.1.3 76380 2euaA 431 62.36 d.161.1.1 132380 1f0xA 571 64.00 d.58.32.2,d.145.1.1 39483,41746 2rp4A 76 64.10 2bh1A 250 64.33 c.55.1.11,c.55.1.11 128506,128507 1nrfA 262 66.27 e.3.1.1 92086 1u0kA 288 67.80 d.21.1.2,d.21.1.2 107547,107548 1s2wA 295 67.90 c.1.12.7 98407 1vmeA 410 68.07 c.23.5.1,d.157.1.3 108893,108894 1vk9A 151 69.53 c.97.1.3 108640 1rwiA 270 72.27 b.68.9.1 97987 1oaoC 729 72.44 e.26.1.3 86746 1dxkA 227 72.73 d.157.1.1 42036 1s1pA 331 73.51 c.1.7.1 98350 1djxA 624 73.78 a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1wkrA 340 74.20 b.50.1.2 109395 1g8jB 133 74.79 b.33.1.1 24439 2qkpA 151 76.49 1iwmA 186 77.85 b.125.1.2 83758 2dpfA 115 78.32 2nt0A 497 79.35 b.71.1.2,c.1.8.3 138561,138562 1o5oA 221 80.02 c.61.1.1 92509 1eyzA 392 80.82 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1bqyA 234 81.53 b.47.1.2 26332 1irsA 112 82.03 b.55.1.2 26991 2fcwB 80 82.64 g.12.1.1,g.12.1.1 133289,133290 2furA 209 83.19 b.45.1.1 134185 3c61A 314 84.42 1g0uD 241 84.77 d.153.1.4 41949 1b8sA 504 85.13 c.3.1.2,d.16.1.1 30335,37866 2dt4A 143 86.01 2f20A 240 86.02 d.303.1.1 132791 1vhsA 175 86.37 d.108.1.1 100698 1tqzA 133 87.27 b.55.1.11 119327 1kxrA 339 89.08 d.3.1.3 73175 1j1lA 290 89.22 b.82.1.12 90766 2ppeA 343 89.27 2b9kA 47 89.56 1vqqA 646 89.64 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011