# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.30e-08		
2rp4A	76	18.38		
2f20A	240	19.32	d.303.1.1	132791
2icuA	229	28.05		
1zn6A	227	29.48	d.303.1.1	125373
1gteA	1025	35.13	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	70440,70441,70442,70443,70444
1tqzA	133	37.01	b.55.1.11	119327
2e55A	208	39.68		
1yf5L	254	40.07	c.55.1.11,c.55.1.11	123049,123050
2bokL	55	57.03	g.3.11.1	128917
1irsA	112	62.03	b.55.1.2	26991
1gln	468	63.20		
2yrlA	102	69.67		
1txdA	385	75.04	a.87.1.1,b.55.1.1	107422,107423
2gz6A	388	79.67		
2bh1A	250	89.01	c.55.1.11,c.55.1.11	128506,128507