# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.16e-08		
1x7vA	99	37.71	d.58.4.11	109501
2gj2A	85	39.22		
1zcoA	262	50.96		
2e74D	179	51.93	b.33.1.1,f.23.12.1	132049,132050
1pjjA	271	56.52	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
2bbeA	108	59.74		
1k5jA	124	60.79	b.121.3.1	68201
1ro5A	201	61.27	d.108.1.3	105023
1jw3A	140	61.74	d.208.1.1	67373
2bokL	55	61.87	g.3.11.1	128917
2rghA	571	62.11		
1kzfA	230	65.44	d.108.1.3	73354
1r2zA	274	66.17	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1h5zA	455	68.76	a.104.1.1	90622
2f20A	240	69.31	d.303.1.1	132791
1g8jB	133	73.74	b.33.1.1	24439
1yf5L	254	74.19	c.55.1.11,c.55.1.11	123049,123050
2gffA	106	76.45		
1xe0A	114	76.76	b.121.3.1	115197
2iagA	482	78.04		
1po5A	476	78.18	a.104.1.1	94963
2afhE	289	79.54	c.37.1.10	126683
1z6eB	52	81.79	g.3.11.1	124519
1tdzA	272	83.03	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1irsA	112	88.45	b.55.1.2	26991
1cmxA	236	89.02	d.3.1.6	37130
2cibA	455	89.52		
2ve3A	444	89.84