# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 2.76e-05 1jkeA 145 0.2663 c.110.1.1 66791 1j7gA 144 0.4437 c.110.1.1 84130 3bjuA 521 1.744 1srvA 145 3.681 c.8.5.1 30817 2qedA 258 10.09 1u7iA 136 11.01 d.32.1.7 107724 1f9zA 135 14.85 d.32.1.1 38484 1zosA 230 22.24 1mdl 359 22.89 2p25A 126 24.57 1lt5D 103 24.81 b.40.2.1 24875 2i5fA 109 26.34 1wmhA 89 27.29 d.15.2.2 114744 1qh5A 260 29.03 d.157.1.2 42057 1eovA 487 29.35 b.40.4.1,d.104.1.1 25239,40760 1znbA 232 30.88 d.157.1.1 42039 1fa8A 135 31.21 d.32.1.1 38486 1mqoA 227 31.45 d.157.1.1 103846 1w9hA 427 32.06 c.55.3.10 120785 1nal1 297 32.26 2c21A 144 32.33 d.32.1.1 129649 1m2xA 223 34.09 d.157.1.1 84764 2imhA 231 36.09 1nkiA 135 36.95 d.32.1.2 91941 1jjtA 228 39.73 d.157.1.1 63139 1m3uA 264 39.79 c.1.12.8 84784 1udmA 149 40.32 d.109.1.2 107780 2obwA 258 42.90 2yvqA 143 42.93 2ci1A 275 43.60 1eejA 216 43.90 c.47.1.9,d.17.3.1 33057,38071 2zdrA 349 44.35 1jjeA 222 45.16 d.157.1.1 63117 1zm0A 114 45.91 b.55.1.1 125276 1iy8A 267 46.34 c.2.1.2 83774 1t4oA 117 48.10 d.50.1.1 106425 1x8hA 228 51.52 d.157.1.1 114961 1r9fA 136 51.59 d.255.1.1 97257 1nd4A 264 53.66 d.144.1.6 91815 2cu1A 103 55.47 d.15.2.2 130802 1jc4A 148 56.99 d.32.1.4 62863 1oywA 523 59.94 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2p18A 311 61.02 2drpA 66 61.34 g.37.1.1,g.37.1.1 45026,45027 1kidA 203 61.79 c.8.5.1 30771 1btnA 106 62.93 b.55.1.1 26952 1xkqA 280 64.73 c.2.1.2 115417 2fm8A 135 64.90 d.198.1.1 133767 2qklA 127 66.27 2bifA 469 67.96 c.37.1.7,c.60.1.4 31963,34009 1vjlA 164 69.05 d.257.1.1 100822 1x8gA 227 70.80 d.157.1.1 114960 2e55A 208 71.29 1f8mA 429 72.80 c.1.12.7 29315 1kid 203 73.80 1y9kA 157 74.61 d.108.1.1 122779 1j0fA 100 75.25 c.47.1.14 90739 2fh5A 185 78.15 d.110.4.4 133477 1wy2A 351 81.11 1u6lA 149 83.11 d.32.1.7 113067 1s4nA 348 83.57 c.68.1.16 98501 2e5yA 133 83.71 1t1vA 93 84.17 c.47.1.14 106278 2a8eA 220 85.16 d.296.1.1 126397 1nal3 297 85.36 1pv9A 348 85.55 c.55.2.1,d.127.1.1 95157,95158 1bovA 69 86.12 b.40.2.1 25070 1xteA 154 86.36 d.189.1.1 116017 1xuuA 349 86.61 b.85.1.1,c.1.10.6 116067,116068 2hzfA 114 87.07 1a7tA 232 87.60 d.157.1.1 42041 2j41A 207 88.14 2z0rA 103 88.16 1xtnA 120 89.40 d.189.1.1 116028