# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	9.54e-10		
1t4nA	94	11.80	d.50.1.1	106424
2atrA	138	13.17	d.108.1.1	127305
2yhx	457	13.47		
2i79A	172	15.15		
1tqzA	133	16.27	b.55.1.11	119327
2fa1A	160	18.29	d.190.1.2	133182
2dfzA	381	19.10		
1k8kD	300	25.45	d.198.2.1,d.198.2.1	68309,68310
1y7rA	133	32.28	d.108.1.1	122716
1ursA	402	34.08	c.94.1.1	99833
2f20A	240	35.23	d.303.1.1	132791
2yhxA	457	39.13	i.12.1.1	46024
2zdiC	151	47.60		
2d4qA	257	51.64		
1iwmA	186	55.14	b.125.1.2	83758
2ao0A	324	55.36		
2yrlA	102	56.52		
1wxcB	134	57.37		
1nt4A	391	58.59	c.60.1.2	92102
2q4kA	251	59.02	d.86.1.2	139864
2hdvA	111	59.68		
2gj2A	85	61.75		
1v7pC	200	65.07	c.62.1.1	108408
1p3dA	475	73.09	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1zgdA	312	73.35		
3ci0I	89	74.94		
2j05A	65	75.02		
2ooiA	162	78.14		
2r6gF	514	80.09		
2p86A	215	80.44		
1zuaX	317	80.78		
1t4oA	117	81.12	d.50.1.1	106425
2icuA	229	82.45		
2fcwB	80	83.84	g.12.1.1,g.12.1.1	133289,133290
2ghaA	382	84.62		
1ytvA	366	85.46	c.94.1.1	124016
2bgsA	344	85.91		
1mi3A	322	86.71	c.1.7.1	91274
1k3xA	262	87.42	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1pt6A	213	89.12	c.62.1.1	95091