# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.83e-08		
1tqzA	133	9.656	b.55.1.11	119327
1t4nA	94	10.47	d.50.1.1	106424
2yhx	457	11.18		
2fa1A	160	12.07	d.190.1.2	133182
2i79A	172	21.18		
2atrA	138	25.68	d.108.1.1	127305
2f20A	240	28.84	d.303.1.1	132791
2yhxA	457	29.05	i.12.1.1	46024
2dfzA	381	30.52		
2rp4A	76	31.59		
1r6lA	239	33.58	d.14.1.4,d.101.1.1	97153,97154
1ursA	402	34.11	c.94.1.1	99833
2d4qA	257	35.42		
1y7rA	133	35.50	d.108.1.1	122716
1k8kD	300	36.12	d.198.2.1,d.198.2.1	68309,68310
1wxcB	134	49.24		
2ao0A	324	49.88		
1ytvA	366	50.04	c.94.1.1	124016
1iwmA	186	52.94	b.125.1.2	83758
2hdvA	111	53.41		
2hv2A	400	53.78		
2b9kA	47	57.40		
2yrlA	102	58.06		
1acf	125	59.31		
1m93C	41	60.94		
2ghaA	382	61.61		
2q4mA	217	62.36	d.23.1.2	139870
2ooiA	162	65.09		
2j05A	65	65.71		
2zdiC	151	65.95		
2ci9A	102	67.11		
2iugA	120	70.39		
1t4oA	117	71.27	d.50.1.1	106425
1v7pC	200	72.14	c.62.1.1	108408
2gj2A	85	72.47		
1frb	315	72.95		
1khbA	625	74.89	c.91.1.1,c.109.1.1	68606,68607
2pstX	74	75.09		
1mi3A	322	75.14	c.1.7.1	91274
2icuA	229	75.68		
1p3dA	475	79.14	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2ciaA	102	79.20		
1wgoA	123	80.90	b.1.3.1	114618
1yk3A	210	81.27	d.108.1.1	123493
2r6gF	514	82.25		
2q22A	139	83.11		
1zgdA	312	83.37		
2q4kA	251	83.48	d.86.1.2	139864
2fafA	608	87.20		
1odoA	408	88.58	a.104.1.1	92783