# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.73e-11		
1tqzA	133	3.243	b.55.1.11	119327
2fa1A	160	8.317	d.190.1.2	133182
2f20A	240	10.52	d.303.1.1	132791
2i79A	172	13.46		
1r6lA	239	16.40	d.14.1.4,d.101.1.1	97153,97154
2rp4A	76	17.02		
1t92A	116	17.33	d.24.1.3	112326
1tl9A	339	18.84	d.3.1.3	112505
2yhx	457	18.93		
2g1lA	104	20.90	b.26.1.2	134520
2dfzA	381	22.14		
2iugA	120	22.96		
2ci9A	102	23.02		
1r17A	343	24.33	b.2.3.4,b.2.3.4	96796,96797
2fafA	608	25.21		
2pstX	74	25.98		
2i7fA	108	27.04		
1t4nA	94	29.03	d.50.1.1	106424
2ciaA	102	29.98		
1wxcB	134	30.75		
1y7rA	133	37.20	d.108.1.1	122716
1k8kD	300	41.35	d.198.2.1,d.198.2.1	68309,68310
2icuA	229	42.26		
2fcwB	80	42.36	g.12.1.1,g.12.1.1	133289,133290
1khbA	625	47.95	c.91.1.1,c.109.1.1	68606,68607
1m93C	41	53.67		
2b9kA	47	56.21		
2hdvA	111	57.50		
2bhoA	130	59.00		
2yhxA	457	59.62	i.12.1.1	46024
1iwmA	186	61.04	b.125.1.2	83758
2b34A	199	62.32		
1utaA	81	64.11	d.58.52.1	108029
1yk3A	210	66.41	d.108.1.1	123493
2p3uA	52	66.64		
1h6fA	193	67.47	b.2.5.4	70901
2qsrA	173	68.37		
2ooiA	162	73.84		
2pr3B	51	74.06		
1kj1D	109	74.16	b.78.1.1	68639
2qf2A	624	76.40		
1qwoA	442	76.90	c.60.1.2	104620
1ftrA	296	78.27	d.58.33.1,d.58.33.1	39485,39486
1qu0A	191	82.52	b.29.1.4	24225
2d4qA	257	83.15		
1whoA	96	84.77	b.7.3.1	23215
1v7pC	200	85.82	c.62.1.1	108408
2rckA	225	88.07