# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.79e-09		
2dfzA	381	6.065		
1tqzA	133	11.65	b.55.1.11	119327
2i79A	172	14.40		
2f20A	240	18.42	d.303.1.1	132791
1acf	125	20.52		
2yhx	457	27.08		
2rp4A	76	28.63		
2fa1A	160	29.15	d.190.1.2	133182
1t4nA	94	30.08	d.50.1.1	106424
1ursA	402	34.66	c.94.1.1	99833
2pstX	74	41.29		
2b9kA	47	41.93		
1ftrA	296	45.72	d.58.33.1,d.58.33.1	39485,39486
1k3xA	262	50.76	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1iwmA	186	51.37	b.125.1.2	83758
1k8kD	300	51.68	d.198.2.1,d.198.2.1	68309,68310
1r2zA	274	51.72	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1wxcB	134	52.22		
1t92A	116	52.66	d.24.1.3	112326
1z6eB	52	60.03	g.3.11.1	124519
1ytvA	366	61.81	c.94.1.1	124016
2ghaA	382	64.84		
2q22A	139	65.90		
2b34A	199	66.39		
1y3nA	490	69.67	c.94.1.1	122597
1odoA	408	69.76	a.104.1.1	92783
1wgoA	123	69.88	b.1.3.1	114618
2d4qA	257	70.64		
1ee8A	266	71.30	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1tqnA	486	74.04	a.104.1.1	107238
1tl9A	339	74.04	d.3.1.3	112505
2v82A	212	76.24		
1h6fA	193	76.48	b.2.5.4	70901
2yhxA	457	76.66	i.12.1.1	46024
2ve3A	444	79.64		
2r6gF	514	82.84		
2p86A	215	83.29		
1jpzA	473	83.98	a.104.1.1	67069
2zdiC	151	85.02		
2dg5A	366	85.46	d.153.1.6	131500
2bz6L	53	86.17	g.3.11.1	129553
2od6A	110	87.06		
2fdvA	476	88.63